RNA id: TCONS_00009604


Basic Information

Item Value
RNA id TCONS_00009604
length 3529
RNA type mRNA
GC content 0.50
exon number 17
gene id XLOC_004865
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 34763795 ~ 34822821 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATTATAGCGACCTGTTGAAGGACAGCCGCATCAACCCACTTATCTCAATCAAACTTTAGACCAGTGTGGAAACACCACATCCACATCCATCTGGACTTTAGAGAACTCAGCCTCAAAACGGGCCAAAATGACCGCGTCAAACTGGGGTTTGATCATGAACGTTGTAAACAGCATTGTGGGTGTGAGTGTTTTGACGATGCCCTTCTGCTTCAAACAGTGTGGAATTGTTTTGGGCACCTTGTTGTTGTTCTTCTGTTCCTGGATGACACACCAGTCCTGCATGTTTCTAGTCCATTCGGCCAGCAACACCAAACGCAGGACTTATGCTGGACTAGCATTTCATGCATATGGAAAACCAGGCAAGGCACTTGTGGAATTAAGCATGATTGGCCTTATGCTGGGGACGTGCATTGCATTCTATGTCGTCATTGCAGAACTGGGGTCCAACTTCTTTGCTCAGCTGTTAGGGCTGCAGGTGACTGGTAGCTTCCGTGTCGTATTGCTGTTTGCAGTTTCGCTGTTCATCGTGTTGCCCCTCAGTTTGCAGAGAAACATGATGTCATCCATTCAGTCATTCTCCGCCATGGCGCTGATCTTCTACACACTCTTCATGTTCACGATAGTGTTGTCGTCTCTGCGTTACGGAATAATCAGTGGCTCCTGGGTGGAGCGAGTACATCTGTGGCGCTTCAAGGGTGTCATACAGTGTCTGCCAATTATCGCCACCACCTTCTGCTGCCACCCgcaaGTGTTGCCCACTTATGACAGCCTGGATGAGCCATCAGTGAAGAGAATGAGCACAATATTCACCTCCTCTCTCAATGTGGTCACCACCTTTTACATCACAGTGGGGTTCTTCGGTTATGTGAGCTTCACAGATAACATCGCTGGGAACGTACTGATGAACTTTCCATCTAACCTGGTGACGGAAATGATCCGTGTGGGCTTTATGATGTCTGTGGCTGTGGGCTTTCCCATGATGATCCTGCCTTGCAGACAGGCCATCAACACCATGCTATTCGAGCAGCAGcaaAAAGATGGCACTTTTGCCGCAGGAGGGTATATGCCACCCCTTCGCTTCAAGAGCATCACTCTGTGCATCGTTTTTGGCACCATGTTTGTTGGCATCCTCATTCCTAATGtGGAGACCATCCTGGGTCTGACCGGAGCCACCATGGGCAGTCTGATCTGCTTTATCTGTCCAGCTCTCATCTACAAGAAGATCATGAAGAACGCCTGGACCGCACAGCTGGTTCTGTGGGTCGGTCTGGGGATCCTGCTCATCAGCACTGCCACCACAATGTCCATTTCCTCCAACGAGCCGGCAAAAATAACCCCCGCTCAGGATGTCCCTGCAAAAACCGAGAACAAGCTTCCCAACATCATCGCCCCCGAATTACCTAAAGTTCCAGTGCAAGAGAATAGAGTGGAACCTGATCCAGGAGAGAAGCCAGATAGGCCTCCGATTGAGGTTGAACAGCCAGCAGAGAAGAAAGCAGACGAGCCCCCTCAAATTAAAGTACCTGTGGACGTGGTTGAGCAAAAGAAAAAAGAGGAAGAGGTTCAGCTGGACCGCCCTGAAGCAGGTGTAGCCGTCCCGGAAGGTGAAGCGCACCGCCATGAACCGCCCATCCCTCATGATGGAGTTCAGATTGATGAGATCAAAAACCAAGAGGAGTTGGAGGATGAAAAGAAACAACCCGCCATTGTGGAGGAAGAGAAGAAGTTACCTGCCAGAGAGGAGGAGGAGTTTCTTGCTGAGCAGGGGGCGGGGCAAGCACAAGAAGTGGGGTCCGATGCTGTAAAAGAGGAGGAGCAGAAAGAACAAGATGACGTAGAGAAAAGGGCTGTTGACAAGGCTAACAAAGTGGAAAACCCAGAAGATCCGAAGCAGCCATTGGGGGTCCATAAAGAACCAGAAAACCTGCCTGAAGTGAAACAACAGCATGGTGAGAATGAAGCCGACGGACAGAAGAAACCAGAGGAAATTGAGAAAGCCCCTGAACCCCAGGAAGAGAAACCGAAGGAGAAGATTGTGGAGGAGCACAAGGACGAGAAGGTTCCAGATGGGAAAGATGGAGGAGCGGAGAAAGATGGAGATGGAGACAAGATGGAAGTGATTAAAAAGATTGTTGCAGAGGGTCAGTTGGACCATATGCTGCTGCAGGTAATTAAGGAGCAGCAGGAGCAGCAAAAAAGGCTTCTGGACCAACAGGAAAAGCTCTTGGCAGTGATTGAGGAGCAGCACAAGGAGATCCACCACTTGGACCAGGAGGAAAAACACTTGCCTGTGAATGATGTGGTCCCTCAAGTAAAGGAAGGAGAAGCTGAGCCAAAGGCACCAGCAGCAGGAGAGGGCGCGAGTGAGGTGGAGAATGCTGTGCCGAAGCAGCAGGAAGACATAGCGGTGGCAGTGAAGCCTAAAGTTGCTGTTGATGCTCCAGAACAATTCCAGCAGCCCCAGGGAGAGCCAGTGCAGGTTCCTGTAGCTGTTGCAGTGCCTGAGGAGCCGGCAGCAAAAGAGGCTCAAGCTGTGGCTGGTCTTCCCAAAAATTCCCTTGAATTAGTGCAAGACCAAGGTGTTGAAGTTCCCAAGAAGGAGGACCTGGAGCTGAAAAACGAAGGAGTGCTTCCTGAGGTTGGTGCCCGTGGTGTTCCACTGCGCCAGCGTGAACCAGAAGTGGACAAAATCAATCCTGATGCTCTTGCAGAGAAAGAGGAGAAAGTAAAGCAGAAATTGGCCCAACTGGAGGCAGAGAAGGAAAGAATCGAAAAAGAAAAGCTGGAGAAGGAAAGGATTGAGAAGGAGGTGCAGGCTCGAGTGGAGAAGGAGAGGAAGGAGCGGGAAAAAAGAGAAGAGCTTGCACGAGAAAAGGAGCTAGAACTCGTGCGGCAGCAGAAGGAACATTTAGAGAAGGAAAGGCTAGAAGCGGAGAGATTGAAAGAGGAAAGAGAGAAGATGGAAAAAGAGATCATCGAGCGTGCTGAGGAGAAGAAAAGATTGCTCGAGCACAAGGAACGTGTAGACCAGCTGCAGCAGGTCATCGATGCACGACATGAGAAGCAGAAGAAGGAAAGTCTTGAGGATGAGAATTTGAAACAGGAACGAGAGAAGATGGATAAAGAGATCATGGAGCGCGCCGAGAAGGAGAAAGTAATTCAAGAGCACAAGGAACGGCTAGAGCAACTACAGCAGGTCATCGATGCCAAAAAGGAAGCTGATGCTCTAAAAGAAGGAGTCCCCCCAATGCCCAAGCAAAACGGAGGCAGGGACTTAAAGGAGAACATCGTCCCACTTGAGGAGCAGAAACAGGAAAAGAGGAGCAGAGAGGATGGCGGACTGGACCTTAAGAGAAGGCGCAGAGCTTTGGACCTAGAGGGTGGAGAAGGCGCTGACCTGGATCTTCTGCAGGATGTAGGGGGTTTATTCTTAAATCCTGATCTAAAGGGGCAGTTGATGGCAGAGACTCTGGTTCACACACGCCAGCTTCAGCAGACGTTTCAAAGACAGGTGAATGAAGAGTAG

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050309-21 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in notochord. Orthologous to human SLC38A10 (solute carrier family 38 member 10).

Ensembl:

ensembl_id ENSDART00000126420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010973 lncRNA upstream 21775 34732315 ~ 34746331 (+) True XLOC_004864
TCONS_00010971 lncRNA upstream 297643 34459669 ~ 34470463 (+) False XLOC_004863
TCONS_00010972 lncRNA upstream 297643 34459718 ~ 34470463 (+) True XLOC_004863
TCONS_00009598 lncRNA upstream 586672 34179988 ~ 34181434 (+) True XLOC_004860
TCONS_00010969 lncRNA upstream 1162668 33602524 ~ 33605438 (+) True XLOC_004855
TCONS_00010974 lncRNA downstream 23634 34844442 ~ 34846842 (+) True XLOC_004867
TCONS_00010975 lncRNA downstream 237339 35058147 ~ 35059608 (+) True XLOC_004874
TCONS_00010976 lncRNA downstream 525017 35345825 ~ 35348411 (+) True XLOC_004879
TCONS_00010977 lncRNA downstream 884325 35705133 ~ 35706948 (+) True XLOC_004884
TCONS_00010978 lncRNA downstream 1017480 35838288 ~ 35842371 (+) True XLOC_004885
TCONS_00009602 mRNA upstream 34668 34732262 ~ 34733438 (+) False XLOC_004864
TCONS_00009601 mRNA upstream 370967 34378733 ~ 34397139 (+) True XLOC_004862
TCONS_00009600 mRNA upstream 490641 34273240 ~ 34277465 (+) True XLOC_004861
TCONS_00009599 mRNA upstream 491775 34258139 ~ 34276331 (+) False XLOC_004861
TCONS_00009597 mRNA upstream 593739 34127573 ~ 34174367 (+) False XLOC_004860
TCONS_00009607 mRNA downstream 7000 34827808 ~ 34842512 (+) True XLOC_004866
TCONS_00009608 mRNA downstream 33754 34854562 ~ 34870089 (+) True XLOC_004868
TCONS_00009610 mRNA downstream 70721 34891529 ~ 34892823 (+) True XLOC_004870
TCONS_00009611 mRNA downstream 76148 34896956 ~ 34901874 (+) True XLOC_004871
TCONS_00009612 mRNA downstream 132230 34953038 ~ 35019303 (+) False XLOC_004872
TCONS_00009593 other upstream 788026 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009582 other upstream 1300377 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009570 other upstream 1816210 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009554 other upstream 2851054 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 3559555 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009609 other downstream 60969 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 285767 35106575 ~ 35107998 (+) True XLOC_004876
TCONS_00009628 other downstream 790890 35611698 ~ 35611814 (+) True XLOC_004881
TCONS_00009648 other downstream 2877794 37698602 ~ 37698717 (+) True XLOC_004908
TCONS_00009670 other downstream 4609394 39430202 ~ 39430317 (+) True XLOC_004923

Expression Profile

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