RNA id: TCONS_00000076


Basic Information

Item Value
RNA id TCONS_00000076
length 796
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_000039
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1896737 ~ 1899848 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTTTAGTCGATTATCAAAAGGTTTGAGTATTTGCTGTATTCAGTAGAGCAATGAGCTGCCAACACAATCTCTTGCTTTTATTCCTCTGTGACTTCGCCGCGCTCACTGTCTCAGCACAGACATGTGGAGAACAAGTGCTAGAAGGAACATCCTGCAGCATTTATGGAAAAACAAGAAACAATGAAAAAGCTGCAGATATCAGATGGGCCTTTACCTCCAGTAATGGAAACTCAGCTGAATGGAAAAAAGGATCCAGGAGAAAACCTCCAGCAGGATTAACAATAGAAGAAGACGGATCTTTACGATTTATAAGTGTTGATCAGAGTAACACCGGCACATATAAATACAAAGCTTTTAATGCCAATGGCCAACAGATTGGGGATGAAactgtggaactgaaagtttatGCGAAGACTCCTAAACCTACTGTGAAGCGTGAATGCACAACTAATAGCGTAATACTCATCTGTGACACTGCAAACTATAAAGATCTGAATATATTCTGGTATGAAGATGACAAGATCCTGAAGGATGAAACAAAACCTTATCTTACGTTAATGCGGTCTAAAATGAAGAAGAACAAAGGGTACTCATGCAGTgTGCAGTCCTCTCCAGTCAGCAGAGAACATAGCAACAGAATTACAGTCTCAAGTAGCAGTCCAGGCCTTTGCTTAGATTTCTGGGTTATGCTGAGCATTTTAGCAGGTGGAGGAGCTCTTCTGCTTCTCCTATTATCTGTTCTCATCTGCTGTGCATGTCGAAGTTATGGTCAACACAAGAAGAACCAACCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-469 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD2 (CD2 molecule).

Ensembl:

ensembl_id ENSDART00000152442

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000073 lncRNA upstream 104214 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 165253 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 190857 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 205712 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00003012 lncRNA upstream 277423 1617203 ~ 1619314 (+) True XLOC_000034
TCONS_00003015 lncRNA downstream 101868 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 123561 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 396743 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1818818 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2698212 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00000075 mRNA upstream 46633 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000074 mRNA upstream 81077 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000072 mRNA upstream 99905 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000066 mRNA upstream 165173 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000063 mRNA upstream 190578 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000078 mRNA downstream 4571 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000079 mRNA downstream 16119 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000080 mRNA downstream 41183 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000081 mRNA downstream 125237 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000082 mRNA downstream 201693 2101541 ~ 2129631 (+) False XLOC_000046
TCONS_00000069 other upstream 103366 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 164411 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 173580 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 178210 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 321174 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 290852 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 372413 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 375757 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 387001 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 402110 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

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