RNA id: TU100015


Basic Information

Item Value
RNA id TU100015
length 635
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G67630
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4141054 ~ 4222171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttATACGGTAAACTGTGATCtagatttatttaatgcaatttacaaAAGCAACTGAGGTTTTAATTGGCTTTCAACCAACTGCTATAAATTTACAGTCACACTATCAACCAGCAGTTTAACCCTGAATGGACCCTTACAGGCTCTACACACACAACATTACCCCTATACTGATGTAGAGAAAGTGCTATCAGGTTCTTTATATCCATGGTGAGTTTCAGCTTGATATGCAAGTAGCACCGACGGAGCTGTTGCTTTTCTCATTCGGTGGGCATGAACAGGGTTTAAACAGTTgaacaatatttaattgtttcatGATTTCAGACTTTATATTCATACGCTTTCTCTTTTCGCAGAGACCGACAGCAGTTTTGGAAGCAACAGCAAAAATACGTAATTCGAAAGTGTGCTAAATGTTATGCAATGTTAGGTAACTAGCAGATTTTCACATGGCGAACAGGATCAAGAAAGCGACCATCAAACAGAAGAGCCCCATGGCTTCAGACAGAGCAAAACCCAGGATGGCGTAAGAGAAGAGCTGCTGCTTTAGAGATGGGTTCCTGCAAAACAAACGCATAACAGTCTTACTAAATATTGCCTGCATGGAGAGATGTGCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100051 lncRNA upstream 8509 4207690 ~ 4208541 (+) True G67657
TU100030 lncRNA upstream 51978 4162356 ~ 4165072 (+) True G67641
TU100026 lncRNA upstream 59087 4156656 ~ 4157963 (+) True G67637
TU99979 lncRNA upstream 152089 4064637 ~ 4064961 (+) True G67606
TU99977 lncRNA upstream 178228 4038596 ~ 4038822 (+) True G67604
TU100017 lncRNA downstream 465 4219975 ~ 4222171 (+) False G67630
TU100097 lncRNA downstream 132191 4351701 ~ 4404210 (+) True G67680
TU100104 lncRNA downstream 135495 4355005 ~ 4356813 (+) True G67684
TU100146 lncRNA downstream 303776 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 353064 4572574 ~ 4575436 (+) True LOC122351246
XM_043249288.1 mRNA upstream 90037 4120527 ~ 4127013 (+) False scrn3
XM_043249289.1 mRNA upstream 90037 4120530 ~ 4127013 (+) True scrn3
XM_043249290.1 mRNA upstream 91603 4120527 ~ 4125447 (+) False scrn3
XM_043248594.1 mRNA upstream 104825 4109650 ~ 4112225 (+) True sp9
XM_043248534.1 mRNA upstream 231088 3981346 ~ 3985962 (+) True cdca7a
XM_043248257.1 mRNA downstream 162014 4381524 ~ 4382885 (+) True hoxd13a
XM_043248255.1 mRNA downstream 165929 4385439 ~ 4387003 (+) True hoxd12a
XM_043248258.1 mRNA downstream 170138 4389648 ~ 4392011 (+) True hoxd11a
XM_043248345.1 mRNA downstream 175206 4394716 ~ 4397578 (+) True hoxd10a
XM_043248300.1 mRNA downstream 179213 4398723 ~ 4401072 (+) True hoxd9a
XR_006251811.1 other upstream 91600 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 233468 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 265739 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 294172 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 1020529 3194795 ~ 3196521 (+) False LOC122351419
TU100101 other downstream 191366 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 337633 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 489543 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 796123 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 920703 5140213 ~ 5142152 (+) False ndufb3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU586806 True 659 lncRNA 0.38 2 CI01000353 26516 ~ 58624 (+)