RNA id: XM_043248049.1


Basic Information

Item Value
RNA id XM_043248049.1
length 1771
RNA type mRNA
GC content 0.57
exon number 9
gene id wipf1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4142290 ~ 4150239 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCTTTAAGTGGAGGTTGAGAGGGAGGGAGAAGCGGTGGCCCGGCTGGAGAGCATCCCTCGCCGGATGAGCGCTGGGTTTTCTCTGTAAGCTGCTGCTTTTTCTGACAGTGCTCGACCACAGAGGAAACTCAACAGAGGAAGCGGCTCGCTCTCTCGACTTCACAGAGCTTctgaacaaaactaaaacaactgTCCGCTCGCTGTGTTCGATCGCATCTCAGATAGTAAAACTCTTTTAGGTTAGTGATAAAGAAGAGGAAATATGTCCGGACCGCCACCACCGCCCCCTCCTGGCCCTCCTCCAACCTTCGCACTGGCAAACACAGAAAAGCCAAATCTGAGCAGATCCGAGCAGCAAGGGAGAAACGCTTTGCTATCAGATATCAGCAAAGGAGCTCGACTGAAGAAGGCCGTCACCAATGATCGGAGTGCCCCGGCGCTGGACAaGCCCaaaggaggtggaggaggtggaggtggaggtggaggaggaggagcccAGGGTGGACTGGGTGGGCTGTTTCAGGGTGGGATGCCAAGACTGAGATCATCAGGAAACAGAGACAACACTGCAGTAAGACCACCGATGCCTCCTTCAGTGGGAGATTCCCAGCACCCGGCAGCCCAGCGGGAAACAGACCCCCGCTCCCGACCGCCGGGAGACCTTCTCCTGGGAGGGCCGGACCCCCACCTGTACCACATTCATCTCGCTCACCCCAGCACAGCTCTCCCAGCGGCCCACCGGCTCTACCTGGAGGACGCCCGTCAGGTCCCTCACCATCTCTTCCTCCCCCCAACCCGTCGAGCAGACGTCCAAGCCTTCCTCCACCGAGGGAGTCCCAGGCTTCCTTCCCTCCACCCCCGATGCCCTCAAGTGCCCGGCCCGTTACCCACAACCCCAAGCAGGCCTGCAGATGACTTCCCTCCGCCTCCACCACCcactggaggaaaaaaagagtcattttctCGAAATGGACCATTACCACCCCCGCCGCCATCAACCGAGAGTAAACCACTGAGTTCTCAGAGGCCTATGGGTAATCCGCCTCCATCCTTACCTccaggaagaggaggagcgCCACCCGTCCCGCCATCCTCACGGGACGAGCTCAGCTCAAGAGGCTCTCAGAGAAACAgctttcctcctcctccgcctCCTGGCCGCTCCAGCCCGCTGCCGCCACCGCCCAATGAGAGGCCGCCTCCATCGGGAAGAAGCCCATCCATACGGTCAGGTCCTCTACCACCTCCACCCACTGGAGGAGGAGGCAGAGGAACGGCTCCCCCCGTGCCTCCTCCCAACCGGCCCGGAGGATCAGGGAGACCCCCTCTACCTCAGGACCCTCCCAAAGTGCCCAGCTTCCCTCCACCACCCCCTGACACCATCAATGGCTACCAGTGCCCTCCACCACCTGCCACAGATGAGTGGGGGAAGAGGTTTTCCTTCCATCCTCTGTCTGAATTACCTCCACCAGAGCCGTACACCTCCTTCTCCAAGTCTTACCCCAGCAAAGCGGGTGGCAAAGGAACGAGAGACAGAGGAGCGCCACCGTTGCCACCCATTCCCAGATGAAATGCTTTGATATTATATAGCGGGATCTGGATTTTCATCGGCTGAATGAGACTCAGGAACTCTTCtgtgaaaatatgaatgtttttagcTTTTCAGTTACATTTTCCAAATCACTTTTGCGTGCATTGCGGGTTTTTATATCATGGTACGAATGTATGTCCAGATATAGCGATTAAAGTGCATTCTGTCGTCTTTTGA

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K19475 WIPF; WAS/WASL-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100078 lncRNA downstream 20187 4120463 ~ 4122103 (-) True G67668
TU100076 lncRNA downstream 20187 4120548 ~ 4122103 (-) False G67668
TU99978 lncRNA downstream 95577 4046486 ~ 4046713 (-) True G67605
XR_006251750.1 lncRNA downstream 118896 3989592 ~ 4023394 (-) True LOC122351402
TU100136 lncRNA upstream 273831 4423977 ~ 4424298 (-) True G67710
TU100138 lncRNA upstream 277142 4427288 ~ 4427646 (-) True G67712
TU100168 lncRNA upstream 401091 4551237 ~ 4551875 (-) True G67733
TU100165 lncRNA upstream 402278 4552424 ~ 4555750 (-) True G67730
TU100185 lncRNA upstream 465712 4615858 ~ 4618868 (-) False pde11a
XM_043249538.1 mRNA downstream 2170 4128136 ~ 4140120 (-) False gpr155a
XM_043249537.1 mRNA downstream 2171 4127366 ~ 4140119 (-) True gpr155a
XM_043248597.1 mRNA downstream 22247 4074035 ~ 4120043 (-) False cir1
XM_043248596.1 mRNA downstream 22247 4114761 ~ 4120043 (-) False cir1
XM_043248595.1 mRNA downstream 22247 4114761 ~ 4120043 (-) False cir1
XM_043249173.1 mRNA upstream 8714 4158860 ~ 4196267 (-) False chn1
XM_043249174.1 mRNA upstream 8714 4158860 ~ 4195589 (-) True chn1
XM_043249305.1 mRNA upstream 47771 4197917 ~ 4218493 (-) False atf2
XM_043249304.1 mRNA upstream 47771 4197917 ~ 4218490 (-) True atf2
XM_043249307.1 mRNA upstream 56289 4206435 ~ 4218494 (-) False atf2
TU100077 other downstream 20451 4120548 ~ 4121839 (-) False G67668
TU99606 other downstream 947798 3189847 ~ 3194492 (-) True G67358
TU99607 other downstream 949350 3189847 ~ 3192940 (-) False G67358
TU99608 other downstream 949350 3189847 ~ 3192940 (-) False G67358
TU99433 other downstream 1305667 2814935 ~ 2836623 (-) False LOC122352064
XR_006251761.1 other upstream 644805 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other upstream 644807 4794953 ~ 4822962 (-) False LOC122351499
TU100372 other upstream 706504 4856650 ~ 4945665 (-) False LOC122351456
TU100414 other upstream 809571 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 860367 5010513 ~ 5014735 (-) False dbi

Expression Profile