RNA id: TU100097


Basic Information

Item Value
RNA id TU100097
length 789
lncRNA type read_through
GC content 0.34
exon number 2
gene id G67680
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4351701 ~ 4404210 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATcggttttaaaaactttatttctcaTATTAAACCTtgtagacaaaataaaaacagcactgtATTTCTGCACATTATGCTATTAGATAACTCATCTGCTTTTCTTCACACTGGAAGCAGGTGGAACATGAAGGCACATAAGGCTGAGAACACTGAAGGGCTGTTTCTATGCCGTAATAAATAGCCAGACATTCCTATGACGATACCTGAACAGACATGTAAACATGGGACCGATCGCACCCAATGTACGTTACACTTCAAAAACAGGCACTGAGAGGACATTCATAactataaatagtataaatatacttttgaacaggacatttttgcattattacatattgtaaataagaatattaaatacattcagtcACAAAACAGTGCTTACGTGGAGAATGAAATGAAACGCGTGTAAATAGCCGCTTTTCTTGTCAACTAAGAGAATAGGAGAAGTTAAGCTTTAGCTTTTACATACAGCTTCGATTGTAAACAAAGACACTATATTGCCTGACTATTAAACTAAACTTGCGATTTAACTAAaggcaaataataataacaacaacaacaacaacaacaataataataataaaaaaaaaccctcacaaAAATGCCTTTGACCACTAAACTATTAATTCCTACTTGGCTTGGATTTACTAATCTATGAAATAACACTGCAGTAACGTGtagaaattaaaaagtaacataCGTAAGGTAAAGAATAAGAaagtcaaacccacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0001701 in utero embryonic development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100017 lncRNA upstream 129530 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 132191 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 143160 4207690 ~ 4208541 (+) True G67657
TU100030 lncRNA upstream 186629 4162356 ~ 4165072 (+) True G67641
TU100026 lncRNA upstream 193738 4156656 ~ 4157963 (+) True G67637
TU100146 lncRNA downstream 119076 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 168364 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 168466 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 168466 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 273240 4677450 ~ 4685181 (+) True G67752
XM_043249288.1 mRNA upstream 224688 4120527 ~ 4127013 (+) False scrn3
XM_043249289.1 mRNA upstream 224688 4120530 ~ 4127013 (+) True scrn3
XM_043249290.1 mRNA upstream 226254 4120527 ~ 4125447 (+) False scrn3
XM_043248594.1 mRNA upstream 239476 4109650 ~ 4112225 (+) True sp9
XM_043248534.1 mRNA upstream 365739 3981346 ~ 3985962 (+) True cdca7a
XM_043249717.1 mRNA downstream 5685 4409895 ~ 4413160 (+) True hoxd4a
XM_043249716.1 mRNA downstream 13078 4417288 ~ 4423340 (+) True hoxd3a
XM_043249762.1 mRNA downstream 143291 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA downstream 143291 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249604.1 mRNA downstream 171972 4576182 ~ 4610978 (+) True agps
TU100018 other upstream 129530 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 131306 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 226251 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 368119 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 400390 3948036 ~ 3951311 (+) True G67566
TU100101 other downstream 6666 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 152933 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 304843 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 611423 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 736003 5140213 ~ 5142152 (+) False ndufb3

Expression Profile