RNA id: TU100144


Basic Information

Item Value
RNA id TU100144
length 4119
RNA type TUCP
GC content 0.47
exon number 2
gene id G67717
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4523286 ~ 4562602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattatataaagccAAAAGGTCAAGAGATAAAATAGCAATAGAATAGTAAATTAAGATATAAAAACTGACATAAGTGCAGACTTAAAATGATCACAACCATTTTTAGCATACTAAAACgtgatctatttttttatatatacagtacatttgttCCTATCTTGATAgcaaataaagtataaatgtatttacaaaccATATAGGTAAAAGAATCTCAGAGAAAATATAAAGGAGTACAAAATCCAACGGAGGTTAAGAATATTAGGAAAGTAGAATACGCAAAACGTATATAATAGTTCTGCCATTTCAACAGTTGATGTATAAGCAAAAATACGCTCCTATTTAGTTGTTTCCTTTGCGTAAAACGTACACCGTGTCCTAACCAGTCGCGATATTCTCAACACTACATGCGACTACACTATGCCAAATAGGAACACACTTGATGATGCTTAATGTACAAAAAAACGTGCAACCAGGTTTTGGACCAATGAGATTTCATTGTGGGCGGGGCTGCCCCCACATCATTGGCTGGTCAGGACAAACGCACTGACGTGAGAAAAGCCTTCGTCGCTTTATTGCGTCATGCCTGGTTAGGACACAGTGTTAGCAAGAGAAAAGCAGTACCAAAAAACAGAAGCAAGTGTGGAAGGACAGTAGTAGAAGGAATCAAGCTAGTTGTTCTTTACGAGAGTCTTTTTAAGGCGAGGAACGAGGAAAACGGTGCCGTCCGCAGTGTGCTGAAGGGAGTATTCGCTGGACGAGAAGGGCTTGCCGTGCTCGTCTCGGAGCATACCGAAGACCTCTTGGTACAAGGTACTCAACTGATGCTTCATCTCTCTCAGACTGGAGCTACGCTCGCTCTTCTCCTTCATCAAGCGCTCCTTCTCCTCTTTCAGCGAGTCCAGCTCGTACTCCAGGCCCACAATGTTCTCCAGCTTCCTCTTGCGGCAGTTCTGCGCAGCAACCTTGTTCTTGCCCCGTCGGCGGATGTCTCTGACGAGGGCGAGTTGGGCCTCACTGAGCTGGTGTTTGGACATCATCTCGTTGAAGTCATCCACAGGTAGATTGATGATCTTGTCCACAGTAAATGGGATCTGCAAGGCTTTTGCTCTCTGTTCGTCACGGGAGAGCCGCGCCTCAGAGCGTTTCTTCTGCTTGTCTTTAGTAAACGGAGGTTTGGAGTGGCCGCTGGCCTCCGCCGGCTCTATCTTTGGGTTCTTCGCTTTCATCTCCTGTTGGTCTGCCGGAGGTTTCTCCGAGAGAGTTCCCAGCGCTTCGTCGTTAAGGTAAACCAGCGGGAATATCTCGGTGTAATCTGACTCCATGCCTGCAGGACTGTCGTCCATCTCTTCCGAGTCAGAGTCGCTGAAACCAAAGGATCCATCTCCGTTCACGGATTTCCCCGGAGAGCTCATGTGAGGACTGGAATCCAGCGACAAGCCGGAATCAGAATCTGGGAATTCTGTCATAGGCTCCGGTTTTCCTGAGCTGAAGCTTCCAGGTGAGAAGCTGTGCAGATCCATGGGGTTCACAGGAGGGTCGCTGGGGATCTCCGCCAACTGGCTGGCCATATTTCCTCCGTCGGATGCTAGAGGATCGCTGTTCACTTTAACCTCCATCTCGGGGTAAAACAGCTCGTTGAATTCTTCAGGTCTAAACTCGGCTCCCACATCCGGGACGTTTAGACTCATCTGGCTGAGGTTGGGGGACACCATAGTGTTGAAGGATCCATCGTAAGTGTTAATGTAGTCGGGAGGACACCCCACCTCTGTCTGCACTGACGAGAGATGGTCCATCCCGGGCAGGTACTGGCTGTAGTTTGGGTCCTGTGCTTCTGCGGAGGGTTTCATAAATCCATCCATGTCCAATGACTCCTGCATCTGCATGTTGAGGCActgctaaaTCTGGGAGTGAGAGCAACTCCATCCACGCCTGATCCAGAGCGCCTGGCAGCAAAGGATTCTGGGTAAAGGCTGGGATGTCTGGGGGCATCATAAGATCTGTGGAAGGAGGAACGGAGGCATCCAGGCAAGGCGGAGCTGACTGCACAGACAAGAAAGAAACAATTAGACTGGAGTGCAGTGACATGTATAGGTGTTGTGTTGCTGTGAGGTGATATATGGGTGACATATAGACCGTAATTACCTCAGCTGGCTCATCTAGTGGAAAAGTCTCAGCCAGGAGCTGCATGCACTCATCGAATGACATGGCATCACCATCGTGTTCTGCGAAGGCCCCATTCTGCACGTACACAGTCAAATACAGCCTAATAAAACCACTGCATCGACACACAGAGCAGAAGACATGCATGTAAAGGCAGATTCTACGACTCGACTGACTTGAATGAGTTTTCGAAGCAACTTTACGAACAAAGCATGTCTGATATTGTGTAAGTGTGTAGGCGTGGGTGTGTCCTGAATTTCTGCCATTCGAATGACACGTGCTCTGAATGCTATGAATTGAATGAATAGTTAAATTGTTgctatttaaatcatttaactCATTAATGGAATTAACTCGGGTCTTCAACTGTGCTCAGACTTGCCAAAGTCTGCCGTTAAAAGTCACGGGTTTTAGTGCGATCTCAAACAGCAAACATTTCTCATTCTTCGAGGATCCAATAGAGGAAGATGTGCCATCGTTTTAAAGCTTCCTTGGCTGGAATCTGCATTTAAAATCGGAAGATAATAACATAAAAGCCACCGTTTAGTGACTTCCTTCATTTAATGTCATAATCTAATCTGATCTGTCTACTAAAAAAACTGTTTCTTAAAAACTATCACCGCAGTCGGCCAAAATTAAGCGTGCTCGCTTCATACAGGACTGAAATCACGTAGACCATCTGCAAAACAAATTCAGCTAATCTCCTCTGGGGAAACGAGGTCTTTAGTGTTGAGTTTACTTGCTTTCGTAGAACTGCCTGAACACCTGAGTTCGAGTAATTATGCCATAGTAGCTGTTCCCAAGCAACTAAGCAGCTGCACCCTGTAATGTGAGGCCCCATGAGCACCTACTgaacatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggagtacctggtatttatcatgtCATGGGGAACAATTGTGCACGCAAGGATagtaataccagtaaattttggcCTTGTTAAAACGCTGATCTACCTTGTCCTTGAAGTAAAAATGGGCGTGGTCATGTGTAGATTCTATGGGTCTATCTTCCGGTCTCACCCACatacagctatttttagctgtacaaaataGTTTGTTCCGCTTCTAGTAGTTAAAATGAGTGtatcttttattgtatttctattattattgtagCGCCAACAGTTTTACCATTTACCGCATTCTCCTCGTCGTTTACCTACAGCATCTAATGAACCTATATGCTTCCACGTTGAAGAGAGAGGTGGATATATGCAGAAAGacgttttttgaaaatctaaacgTTTCCTTTAAGggtttacagtgtgtgtgtgtctgcatgtgtgttcctgtctctgtgtgtgcatgtttctCTATATGTGTGCAtctctgtatgtgtatgtgtatacgtgcatgtgtgtgtgtgtgcgtgtctgtctctgtgtttgtgccagagtgagtgtgtgtctctctatGTGTATGCGTGCACCCatatgtgtctgtatgtgtgtttgcaagtgtgtgtctctctctctttctctctgtgtgtgtgtctctctctctctctctctgtctgtctctgtctctctctctctctctctctcccctgtTGCCCTGTcatggatacacacacacacacacacacacacacacacacactcgcgcctCTCCTCCTGCGCGTGGACTAGTTACCTGTGTGATTTGGGCAGCGGGGGCGGTGTCCTGCGTCAGCGGGGCGCTCCGAGGCACAAACTCTCCGGTCTCCTCGTCCAGCTGGAGCTGAGCGAGCAGAGctttctcctgctctctctgCCGCTGCTGCCTCTTCTCCTCTTCCTTCTCGCGCTGCAGGCGCAGCTCCACCTCCTTCTGTCTGTAGCTGAAGTCAAACACCTCCCTGCCTGCTCCCAGATCCACGTCCTGCCTCCACAGGATATCTATCAGATCCATATCCTGCAGAAACACAGCAGAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100097 lncRNA upstream 152933 4351701 ~ 4404210 (+) True G67680
TU100104 lncRNA upstream 200330 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 334972 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 337633 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 348602 4207690 ~ 4208541 (+) True G67657
XR_006251713.1 lncRNA downstream 9972 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 10074 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 10074 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 114848 4677450 ~ 4685181 (+) True G67752
TU100248 lncRNA downstream 215755 4778357 ~ 4780535 (+) True G67769
XM_043249762.1 mRNA upstream 1394 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA upstream 3966 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249716.1 mRNA upstream 133803 4417288 ~ 4423340 (+) True hoxd3a
XM_043249717.1 mRNA upstream 143983 4409895 ~ 4413160 (+) True hoxd4a
XM_043248300.1 mRNA upstream 156071 4398723 ~ 4401072 (+) True hoxd9a
XM_043249604.1 mRNA downstream 13580 4576182 ~ 4610978 (+) True agps
XM_043248346.1 mRNA downstream 140084 4702686 ~ 4706137 (+) True si:ch211-222f23.6
XM_043249767.1 mRNA downstream 146451 4709053 ~ 4716912 (+) False rbm45
XM_043248632.1 mRNA downstream 157953 4720555 ~ 4772214 (+) True osbpl6
XM_043248634.1 mRNA downstream 157953 4720555 ~ 4772214 (+) False osbpl6
TU100101 other upstream 144001 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 334972 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 336748 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 431693 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 573561 3981527 ~ 3983582 (+) False G67566
XR_006251862.1 other downstream 146451 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 453031 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 577611 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 842627 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 843301 5405903 ~ 5405975 (+) True trnar-ccu_5

Expression Profile