RNA id: XR_006251713.1


Basic Information

Item Value
RNA id XR_006251713.1
length 1375
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id LOC122351246
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4572574 ~ 4575525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGCGTGATTGCGCGCGCACGATTGGCAGCTCCACGTCGACATTCTTCCAACTGCCGCGCGGACGCGCACGCGGCGTGCAAGCGCTTCATCAACAGTTTGCGCGAGCGTCATCCGCTGAAGCAGCGAGCGAAGTCCTCGGGGGCTTTGACAGAGACGACCACCGGCTCGAGGCAGGGCGCAGTGTACTCAGGGTCGGCCGTCTCGTGACTTGCAGCAGCAGAGGGCCCTGCTGAAAAGTTTCACTGAGAAGGAAAACTCTCGAGCAGCGCTGTGGCTTTCCAAGTAAAGTTCTGTGATACACTCAGACTCTAATTGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGTTTAAAGCTCAAGCCTGGAGGAAGCAATCATTCCATCTGGATGAAGCTGTAACAAAACAGCAGTAAACCCCGCATCCTGCGCCCCTCAACAACACGCACAAATAaatcacatcatcatcatcatcatcatcacctccCGCCTTTACGTGATCGTTAGCTTTAACTGCTGAAGAACACCGGAAGCACGAGCGAACATCCTTTTAAGTTTGGGGCTCGCTGACACACAGATGCAGTTGTGTGTTATTTATATGACCCTGTTTCCTGCATGCGTCCTCCAAGCGCTCAATTAGCATAGCGGAGGCTCTGCCGCAACTGCTCAACGTCTAAAAATACCCGTTGCACGGTAACGCGCCGCTTTTCAGTCAGGCATCCCATCCCGTAACCTCCGCGAACGCAAAAATGTGGCACTCTCCATCGTCGTAAAAGGCGTGCGTCTCACTCTCAGCAGGGAGAGCACTTTGTGATGACATCATCGGCCCACAGGAGGCAGGCGAGCGCTCGTCTGGGTCACTCTCACGGTCACGTGACTCAGAAGGACACAGGTTATGGCACTGTAAGTGGGTTAACAGGCCTGACACGCGTTTCTCTTCTGAGAGGACGCAGGCGGGTTCTCAGTCATGAACGTGTGTCTGAAACACTGCCTTCTGAAATACCGTGCAACACGCAAAAAGTGTGCGTCTGGGAAATAAGTGTGAGAAGTTTCGTTCAAGCGCAGTGAAAGTGCATCTGCGACCGATTAGTTGAGAGCATGCAGATCCCGTTTAACCCATGAGGGTGCTCCGGATAAACACACTGATGGACTGCTGACACGCGTCTCATTAagtgtatttcatatttcatttcatattcttTCAGAGATTTAATTGACCGTATTTGGCATCCAAGAGTGTAGTTTACCTGAAGAAAACCTTTTGTGTGTTGAACTGAATTGTGGTTCGTCACACctgcagtttttaaagaaactttctTAATGGAATGAGTGTGTTAGTGTTTCGAGCGAAATAAAACTGTTCAGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100146 lncRNA upstream 13546 4523286 ~ 4559028 (+) False G67717
TU100097 lncRNA upstream 168364 4351701 ~ 4404210 (+) True G67680
TU100104 lncRNA upstream 215761 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 350403 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 353064 4217050 ~ 4219510 (+) False G67630
TU100192 lncRNA downstream 102014 4677450 ~ 4685181 (+) True G67752
TU100248 lncRNA downstream 202921 4778357 ~ 4780535 (+) True G67769
TU100273 lncRNA downstream 247990 4823426 ~ 4823776 (+) True G67782
TU100322 lncRNA downstream 294749 4870185 ~ 4870882 (+) True G67812
TU100349 lncRNA downstream 324049 4899485 ~ 4954081 (+) True G67826
XM_043249762.1 mRNA upstream 16825 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA upstream 19397 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249716.1 mRNA upstream 149234 4417288 ~ 4423340 (+) True hoxd3a
XM_043249717.1 mRNA upstream 159414 4409895 ~ 4413160 (+) True hoxd4a
XM_043248300.1 mRNA upstream 171502 4398723 ~ 4401072 (+) True hoxd9a
XM_043249604.1 mRNA downstream 746 4576182 ~ 4610978 (+) True agps
XM_043248346.1 mRNA downstream 127250 4702686 ~ 4706137 (+) True si:ch211-222f23.6
XM_043249767.1 mRNA downstream 133617 4709053 ~ 4716912 (+) False rbm45
XM_043248632.1 mRNA downstream 145119 4720555 ~ 4772214 (+) True osbpl6
XM_043248634.1 mRNA downstream 145119 4720555 ~ 4772214 (+) False osbpl6
TU100144 other upstream 9972 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 159432 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 350403 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 352179 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 447124 4120527 ~ 4125450 (+) False scrn3
XR_006251862.1 other downstream 133617 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 440197 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 564777 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 829793 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 830467 5405903 ~ 5405975 (+) True trnar-ccu_5

Expression Profile