RNA id: TU100187



Basic Information


Item Value
RNA id TU100187
length 333
lncRNA type intronic
GC content 0.34
exon number 1
gene id G67747
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4636010 ~ 4636342 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATGGATCtaaaataaggtcatgtagaatggGGTCTTTAACATGTGCCTTGCAAGTACTAATAagcagccaatatgctagtaatacgCATGataataaacaactagttaatagcgagaatCGATCCcaatactgaaaaaattattatagcAAAGTTTATTCTCAATCCCATTCCCACAGAATAAGTtccaactgcaaaaaaaaggatgaaaagcAGCTCACATTTACAGAGAATAcgaaatacaattatatttcccactttattattattcttcatGCTAAATAAGCGTTTTAACGATGTGGTGATAACCAGGCACCTCTCACTGTATCGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100185 lncRNA downstream 17142 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 80260 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 84135 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 208364 4427288 ~ 4427646 (-) True G67712
TU100136 lncRNA downstream 211712 4423977 ~ 4424298 (-) True G67710
TU100380 lncRNA upstream 308261 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 368952 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 390702 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 414087 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 452840 5089182 ~ 5089393 (-) True G67923
XM_043249759.1 mRNA downstream 64894 4557126 ~ 4571116 (-) False nfe2l2a
XM_043249758.1 mRNA downstream 64895 4557126 ~ 4571115 (-) True nfe2l2a
XM_043249363.1 mRNA downstream 264419 4367160 ~ 4371591 (-) True evx2
XM_043249553.1 mRNA downstream 274042 4351702 ~ 4361968 (-) False lnpa
XM_043248641.1 mRNA upstream 138653 4774995 ~ 4780677 (-) True prkra
XM_043248535.1 mRNA upstream 145358 4781700 ~ 4791739 (-) True casp10
XM_043248581.1 mRNA upstream 156082 4792424 ~ 4822965 (-) False LOC122351499
XM_043248583.1 mRNA upstream 156082 4792424 ~ 4822962 (-) True LOC122351499
XM_043248582.1 mRNA upstream 156082 4792424 ~ 4822960 (-) False LOC122351499
TU100077 other downstream 514171 4120548 ~ 4121839 (-) False G67668
TU99606 other downstream 1441518 3189847 ~ 3194492 (-) True G67358
TU99607 other downstream 1443070 3189847 ~ 3192940 (-) False G67358
TU99608 other downstream 1443070 3189847 ~ 3192940 (-) False G67358
TU99433 other downstream 1799387 2814935 ~ 2836623 (-) False LOC122352064
XR_006251761.1 other upstream 158609 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other upstream 158611 4794953 ~ 4822962 (-) False LOC122351499
TU100372 other upstream 220308 4856650 ~ 4945665 (-) False LOC122351456
TU100414 other upstream 323375 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 374171 5010513 ~ 5014735 (-) False dbi

Expression Profile