RNA id: TU100322


Basic Information

Item Value
RNA id TU100322
length 676
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G67812
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4870185 ~ 4870882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattttaatattttattcaaagcatTAGGGACGATAtcagttaaaatacagcagaGCAGAGACTGttaaatacagataaaaaaaacaacaacaatcacATTCAGCTGTCCCAcggtataaaaatatttgctaaGTGATAATGTAATGTTGAAcgttagcgtgtgtgtgtctgcacgAGCTCCGCCGCTCCTCCAGTGAGAGTGCTGACCTCATCACACGGACGCCAAGCACGCTTCAAACCAGTCAAAAACTGAACaagtaatacaaaataaacgaTGCAGAGTTTTAGAATACGTAAAAGCCTCTGCAGTCAGAGTCATAGTTCGGATGCGAGcgcacaaataaatgcagtgggCTCCATTCTCCCTCTTCTCTGCTCTCTGTGCTACAGCTATTAAAAAACTGGCAAAATggccaaaataaaatacagttttcaaTAAAGTCTCCACAGGAAACAGTAGCTGAAATCCACTGGATGAGGCAGAAACATAGAGAAAGCTCCCTCGGCTCTCCTCCGCTCTTTGTGACGTCTGGGAGAGGTCAGGTTCACACCACCGAAGAGGAGTTTGGCAGGCCCTGGATAGTGGCGGCAGTGGGCGTCCCGCTGATGGCATTGAAGATGTGCAGCGAATCAGGAAGAGGACTGCGCATCCCATCATCCACTGGACTGATCTAC

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100273 lncRNA upstream 46409 4823426 ~ 4823776 (+) True G67782
TU100248 lncRNA upstream 89650 4778357 ~ 4780535 (+) True G67769
TU100192 lncRNA upstream 185004 4677450 ~ 4685181 (+) True G67752
TU100157 lncRNA upstream 294660 4572676 ~ 4575525 (+) False LOC122351246
XR_006251713.1 lncRNA upstream 294749 4572574 ~ 4575436 (+) True LOC122351246
TU100349 lncRNA downstream 28603 4899485 ~ 4954081 (+) True G67826
TU100348 lncRNA downstream 44377 4915259 ~ 4954081 (+) False G67826
TU100417 lncRNA downstream 129046 4999928 ~ 5011204 (+) True G67865
TU100419 lncRNA downstream 136008 5006890 ~ 5011437 (+) True G67867
TU100427 lncRNA downstream 151358 5022240 ~ 5025362 (+) True G67872
XM_043248519.1 mRNA upstream 17046 4840938 ~ 4853139 (+) True LOC122351440
XM_043248584.1 mRNA upstream 40319 4825378 ~ 4829866 (+) True cmklr2
XM_043248637.1 mRNA upstream 97971 4720555 ~ 4772214 (+) False osbpl6
XM_043248093.1 mRNA downstream 121431 4992313 ~ 5006592 (+) False LOC122351196
XM_043248090.1 mRNA downstream 123724 4994606 ~ 5006592 (+) False LOC122351196
XM_043248088.1 mRNA downstream 123725 4994607 ~ 5006592 (+) False LOC122351196
XM_043248091.1 mRNA downstream 123729 4994611 ~ 5006796 (+) False LOC122351196
XM_043248089.1 mRNA downstream 123731 4994613 ~ 5006796 (+) True LOC122351196
XR_006251862.1 other upstream 152952 4709053 ~ 4717233 (+) True rbm45
TU100144 other upstream 307583 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 457043 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 648014 4141054 ~ 4222171 (+) True G67630
TU100423 other downstream 144751 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 269331 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 534347 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 535021 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1320 other downstream 536594 5407476 ~ 5407548 (+) True trnar-ccu_6

Expression Profile