RNA id: TU100414


Basic Information

Item Value
RNA id TU100414
length 1843
RNA type TUCP
GC content 0.58
exon number 9
gene id G67863
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4959717 ~ 4983747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGCGGAGGATCCCCACCCGTGAGCATGGCGGTGTGCTAGTGTATTAATGAAGACCGGAGGGAGACGACGGAGACGGAAAATACTAACATGCTTCACATAATCAGTTTTTAACGGACCGCGTGTCAGTTCACCGATGCCAGAGGCGGTCCGCTGGGTTTCTCCGCGCAGTCTTCGTCTACTTCTATAGGATGGGGAGCTGAGCAGATAAAAAGCACAAGTTATTGGCGACCGCATCTCCCCAGCCGTTCTCCCCGTCGTGAATCGCAGGCGCGCGTGGGCCGCCGGTGCTCCGTGATCATGAAGCGCTGCTGCGGGAAGCGCGTCTTTGTGCGAGGCGTGTTTACGTCCGCGGACAGACTCGTCTAAACGCCCTAAACATGAACGCCGTTGTCGCGCCGAGCGCCGTGTGAGTTTATTTTGATTCGTCGAACCCTTCAGACCGGAGAGATGCGTGAGTATAAAGTGGTGGTCCTCGGTAGCGGCGGGGTCGGTAAATCCGCCCTTACCGTGCAGTTCGTCACCGGGACATTTATTGAGAAGTACGACCCGACGATCGAGGATTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACGGAGCAGTTCGCTTCCATGCGGGACCTGTACATCAAAAACGGACAGGGCTTCATCCTGGTCTACAGTCTGGTGAACCAGCAGAGCTTTCAGGACATCAAGCCCATGAGAGACCAGATCATCCGAGTCAAGAGTTTATACCCACTTAGGCAGAAACGGACCGTACCGGCTGCCCGTAGCTCCTAGCTGGACTGCGTTACGGCGCGTCGCTCTGCAGATGGCAGCACGTGAGCGCGCGTCGCGTCGGCTGTGAGGTCTCGGGTGCTGCTTGGATCTGTGCCGTGTTCAGTCAGAGTAATCCCGTCTCTCCAGCCGGCAGACATGGCGACTGCGAGGACGCTCGTCTGCTCCGCGACAGGCTGCGTCTGAAGCGGCTCCGCAGCATCGCCGTCGCGCCCGGCGCACTCGCGGACGAACGCGCACTTGCACGCGGCGGATTTATAACCGGGGCTGAGCCGGGAAGACCATGGCGGAACGGGGCCAAGCGTCTCTGGCGGGACAGAGGTTAGGGGCTCCGGAGACTCTGGGGATCAGCACCCTGGAGCCCGGGCACAAACCGCCCGCCATGCCGTCTGGACGCCCGGTGCCCGTCAGAGTCGTGCTGCTGGATGACTCCGAGGAGATTTTTGAAATATCGCATCGAGCATCGGGCCGGGTTCTGTTCGAGATGGTCTGCTTGCATCTGAACCTCATTGAGGGGGATTACTTTGGCCTGGAGTTCCAGAGCCATCACAGAAAGATGGTTTGGTTGGATTTACTAAAGCCCATTAGAAAGCAGATCACACggCCCAAGCACACCGTCCTTCGGTTTGTTGTGAAGTTCTTCCCCCCTGATCACTCGCTGCTGCTGGAGGAGCTGACCAGGTACTTGTTTGCGCTGCAGGTGAGGCAGGATCTGGCGAGCGGACGTCTCACGTGCAGCGACGCCAGCGCTGCTCTTCTGGTCTCTCATATCATCCAGTctgaGATTGGGGATTTTGAGGAAACTCAGTGTAGACAGCATCTACTAAACACCAACTACATCCCTGACCAGATGGCCCTGATGGACAAAATCATGGAGTTCCACCATAAACACATtggACAGACACCAGCAGAGTCAGATTACCGGTTGCTGGAGGTGGCTTGCAGGTTGGAGATATACGGCATCCGACTTCATCCGGCTAAAGACAGAGAAGGAACCAAACTCAGCCTGGCTGTAGCACACGGCGGCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100380 lncRNA downstream 5635 4944603 ~ 4954082 (-) True G67847
TU100187 lncRNA downstream 323375 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 340849 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 403967 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 407842 4551237 ~ 4551875 (-) True G67733
TU100466 lncRNA upstream 21547 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 43297 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 66682 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 105435 5089182 ~ 5089393 (-) True G67923
TU100495 lncRNA upstream 116159 5099906 ~ 5100777 (-) True G67928
XM_043248849.1 mRNA downstream 38161 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248845.1 mRNA downstream 38161 4870192 ~ 4921556 (-) False zmp:0000001200
XM_043248844.1 mRNA downstream 38161 4870192 ~ 4921556 (-) True zmp:0000001200
XM_043248851.1 mRNA downstream 38162 4870192 ~ 4921555 (-) False zmp:0000001200
XM_043248850.1 mRNA downstream 38162 4870192 ~ 4921555 (-) False zmp:0000001200
XM_043248237.1 mRNA upstream 24438 5008185 ~ 5009514 (-) True tmem37
XM_043248550.1 mRNA upstream 26831 5010578 ~ 5014791 (-) False dbi
XM_043248546.1 mRNA upstream 33321 5017068 ~ 5022355 (-) True steap3
XM_043248554.1 mRNA upstream 138460 5122207 ~ 5128098 (-) True insig2
XM_043248556.1 mRNA upstream 154367 5138114 ~ 5139999 (-) False ybey
TU100372 other downstream 14052 4856650 ~ 4945665 (-) False LOC122351456
XR_006251761.1 other downstream 136755 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other downstream 136755 4794953 ~ 4822962 (-) False LOC122351499
TU100077 other downstream 837878 4120548 ~ 4121839 (-) False G67668
TU99607 other downstream 1766777 3189847 ~ 3192940 (-) False G67358
TU100469 other upstream 26766 5010513 ~ 5014735 (-) False dbi
TU100470 other upstream 26766 5010513 ~ 5014813 (-) True dbi
TU100475 other upstream 45179 5028926 ~ 5029475 (-) True G67912
TU100497 other upstream 122147 5105894 ~ 5108387 (-) True G67930
XR_006251815.1 other upstream 366208 5349955 ~ 5369589 (-) False LOC122351925

Expression Profile