RNA id: TU100417


Basic Information

Item Value
RNA id TU100417
length 389
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G67865
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4999928 ~ 5011204 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtaaaaaaaaaaaaacacgcaaaCATGGTTTTTGAAAGTTATTTTATGGCCTTGCACAAATCTGAATTCATTAAGGTTTTCACTACATGGTTACTGGTGGGCTTTCTTTTGGCCTGCAAGAATTGTGCCTGTTCTCTCACACAGAACGGAGTCTGCATGCTGCAGCGTATCTGTGACACCCTAGAGAGGGGACCCGCTGGAGGCCTAAAGGCGCTTCGTGGGAGAACAGTGCAGGTGAAGGCATGCTGGCCCCGAGGGGTTCCGTCCATTAGATCCCGTACTTTCCCTTCAGCTCCTCTACCTTAGCGATGTACGCTTTCACGGCATCCTCCTTACTCATACCTTCTTGGCCTCCCAGGCGTCCCATTTGGCCTTGCCAGTGAAATCTA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100349 lncRNA upstream 45847 4899485 ~ 4954081 (+) True G67826
TU100348 lncRNA upstream 45847 4915259 ~ 4954081 (+) False G67826
TU100322 lncRNA upstream 129046 4870185 ~ 4870882 (+) True G67812
TU100273 lncRNA upstream 176152 4823426 ~ 4823776 (+) True G67782
TU100248 lncRNA upstream 219393 4778357 ~ 4780535 (+) True G67769
TU100427 lncRNA downstream 11036 5022240 ~ 5025362 (+) True G67872
TU100434 lncRNA downstream 15509 5026713 ~ 5027025 (+) False LOC122351471
XR_006251744.1 lncRNA downstream 39246 5050450 ~ 5051912 (+) True LOC122351367
TU100439 lncRNA downstream 40523 5051727 ~ 5052148 (+) False LOC122351367
TU100442 lncRNA downstream 72839 5084043 ~ 5084301 (+) True G67882
XM_043248519.1 mRNA upstream 146789 4840938 ~ 4853139 (+) True LOC122351440
XM_043248584.1 mRNA upstream 170062 4825378 ~ 4829866 (+) True cmklr2
XM_043248635.1 mRNA upstream 227714 4720555 ~ 4772214 (+) False osbpl6
XM_043248549.1 mRNA downstream 4266 5015470 ~ 5017196 (+) False c9h2orf76
XM_043248547.1 mRNA downstream 14359 5025563 ~ 5028639 (+) True LOC122351471
XM_043248060.1 mRNA downstream 47359 5058563 ~ 5059629 (+) True LOC122351173
XM_043249359.1 mRNA downstream 55619 5066823 ~ 5069325 (+) True c1ql2
XM_043249690.1 mRNA downstream 83038 5094242 ~ 5099376 (+) True marco
XR_006251862.1 other upstream 282695 4709053 ~ 4717233 (+) True rbm45
TU100144 other upstream 437326 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 586786 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 777757 4141054 ~ 4222171 (+) True G67630
TU100423 other downstream 4429 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 129009 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 394025 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 394699 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1320 other downstream 396272 5407476 ~ 5407548 (+) True trnar-ccu_6

Expression Profile