RNA id: TU100495



Basic Information


Item Value
RNA id TU100495
length 872
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G67928
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5099906 ~ 5100777 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGTCATTATGTTCAGATCAGCCTGTCATTAACTCATTAGATTCTGTCCAGTGTCCGTTCTCGTCTATGTATACGTGTGATTCCTGATCTTCTGTGTTGAACTAACTCTGTGTGGATTGTTAAAGGCTGTGCATCATTTGCGTGATCCTTCCTGCACCACACTGTGACAGATACAGTATTTAAAGGAGCCAAAGCCAACTGTGACTACAGCACAGGACACACAAACCTGATTTGATTATTTGGAATTAAaaggaaacaagaaaaaaacctGATCTGTAAAACAAATCTGTATTGCCTGCAGGCTAAACAAAGCATTTAGATGAGAGAGAAACATCCCAGGACAGGTCTCAGAGACACTTTCTAGTTGGTTGATACTAGTGCAGTGTTTCTAGTGAAATGTGGTTGGGAAGCATGGTACTAGTGTACTGGTGATGTAATGGGCATTTAGGTTCATAGATAAATATGGTAAGACAGATGAATTAGAAAAGTAATACCAATCTGTCAAAACAGACACATTCTGTAACAAGTTTGTTGCTGTAGCTGTTCTCAAGAAAACAAAGTAGATGAATATAGCCGACTTACAGGACACTGGGCATAAATGCTCAGATCTAAAGGATTAGGAAATCCTGAACGTATTGGTCAGCAGATTTTCCTCAACTCTGTTTACAACACATGGTTATCCACATCAGCACATAAACAAGCAACTTTTAAGGAAACCTCAGCAGTTGTACTTCCTCATTCACGctctaaaaaagcatttttttcaaaataaatgaaacgctTTCCTATGTTGCTCAAGTTTAAAGATTCAAGTTTTCCCTGAACGGTTGTGTTAAAGGACACCATTTGTTGCACAGAAAACTATTTTGTAG

Function


GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100488 lncRNA downstream 10513 5089182 ~ 5089393 (-) True G67923
TU100476 lncRNA downstream 48614 5050429 ~ 5051292 (-) True G67913
TU100474 lncRNA downstream 72309 5027044 ~ 5027597 (-) True G67911
TU100466 lncRNA downstream 93125 5005294 ~ 5006781 (-) True G67904
TU100380 lncRNA downstream 145824 4944603 ~ 4954082 (-) True G67847
TU100482 lncRNA upstream 41013 5141790 ~ 5181500 (-) True G67917
TU100600 lncRNA upstream 296088 5396865 ~ 5397396 (-) False LOC122351915
TU100602 lncRNA upstream 296702 5397479 ~ 5398139 (-) False LOC122351915
TU100650 lncRNA upstream 614564 5715341 ~ 5715637 (-) True G68048
TU100655 lncRNA upstream 634147 5734924 ~ 5735172 (-) True G68053
XM_043248546.1 mRNA downstream 77551 5017068 ~ 5022355 (-) True steap3
XM_043248550.1 mRNA downstream 85115 5010578 ~ 5014791 (-) False dbi
XM_043248237.1 mRNA downstream 90392 5008185 ~ 5009514 (-) True tmem37
XM_043248828.1 mRNA downstream 114310 4977659 ~ 4985596 (-) True LOC122351620
XM_043248536.1 mRNA downstream 125951 4939985 ~ 4973955 (-) True LOC122351456
XM_043248554.1 mRNA upstream 21430 5122207 ~ 5128098 (-) True insig2
XM_043248556.1 mRNA upstream 37337 5138114 ~ 5139999 (-) False ybey
XM_043248555.1 mRNA upstream 37337 5138114 ~ 5139999 (-) True ybey
XM_043249326.1 mRNA upstream 196729 5297506 ~ 5319587 (-) True LOC122351912
XM_043249328.1 mRNA upstream 222952 5323729 ~ 5341221 (-) False LOC122351913
TU100475 other downstream 70431 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 85093 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 85171 5010513 ~ 5014735 (-) False dbi
TU100414 other downstream 116159 4959717 ~ 4983747 (-) True G67863
TU100372 other downstream 154241 4856650 ~ 4945665 (-) False LOC122351456
TU100497 other upstream 5117 5105894 ~ 5108387 (-) True G67930
XR_006251815.1 other upstream 249178 5349955 ~ 5369589 (-) False LOC122351925
TU100767 other upstream 818980 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 942498 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 998570 6099347 ~ 6099883 (-) False LOC122351979

Expression Profile