RNA id: XM_043249331.1


Basic Information

Item Value
RNA id XM_043249331.1
length 2669
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC122351915
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5396865 ~ 5399880 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCACAGATGCTGCAGGAAATATTCAGATTGGTTTTGTGATGGGAAAAGCCAAACTTGCGCCCCGGCCCGAGCACACTGTGCCAAGACTTGAACTTTGTGCAGCAGTTCTTGCAGTCGAGTTTGCAGACTTAATTTCTGCAGACCTTGACCTTCAGCTTGATGCTATAACCTATTACTCAGACAGTAAGGTGGTTCTCGGGTACATTTGTAATGAGACCAGACGTTTTTACGTTTATGTCAGCAACCGGGTACAACGTATCCGAAGGTCATCCAATCCAGATCAGTGGCAATATGTGCCTACAGACCAAAACCCGGCAGATCATGCAACGCGTTTTGTACCCGCAGCCCATTTACAAAACACCAGTTGGCTAAGTGGACCCAAATTTCTGCTCAGGCCAGAATCAAGTACCTCTGCAAGCACTTTCAACCTTGTTGATCCAAGTTCAGACCCAGATGTACGTCCTCTAGTGTACACTTTAAGCACTGCCGCATTATCCAAGCAACTGGGTTCCCAGAGATTTGCCAAATTCTCTTCTTGGAAGTCACTAACAGGAGCCATCACTCGCCTTATTCACATAGCTCGTCATTTCAAGACAACTGGGAAGGAAAACAGTTCCTGTAAGGGATGGCATTACTGCAAAGCTGAATTCAATGTAGAGGAATCTGATAAAGCTTCAGCAATTGTAATCCAAGCTGCACAAGAAGAGGTTTACAGTCAAGAGATCAAATGTATCCAAAAGCAAGAAAGGATTCCTAAAAGTAGTCCTCTTTATACTCTGGATCCTTTCATTGATGCGCAAGGAATTCTTAGGGTCGGAGGTCGTCTCCATCGAGCAAGCTTTGAGCAGAATATAAAAACTCCTTTGATAATTCCAGGCAAGCATCACATTGCTACTTTGCTCATTAGACACTATCACGAGTGTATCCACCATCAAGGCCGCCACTTTACAGAAGGAGCTGTCCGCGCAGCCGGCTTTTGGGTAGTTGGTGGAAAACGTAGGGTGAGCAGCATCATAAGTCAATGTGTAACTTGCAGACGGCTCAGAGCTCCACTCAGCATCCAGAAGATGGCAAACCTTCCAGTAGATCATCTCACAACAGACCCTCCCTTTACCAACATTGGACTGGATGTGTTTGGCCCTTGGAGTGTCTCTTCACGTCGGACGAGAGGAGGTTTTTCTCTCAGCAAGAGGTGGGCtgtaatttttacatgtatGAGCGTAAGAGCTGTTCACATTGAAGTTATAGAATCCCTCGACACATCCAGCTTCATCAATGCTCTTAGACGTTTTCTTGCTGTGCGGGGACCTGTCAAACACATTCGTTCAGACCGTGGCACAAACTTTGTTGGTGCATGTAAGGACTTAAAGATACCTTCAAACATTGACATTAAGACAGTGAAGAGGTATCTGTCAGACCAAAGCTGCAATTGGACTTTCAATCCACCGCATGCTTCCCTTTGCGGTGGAGCATGGGAAAGAATGATTGGAATAGCAAGAAGAATTCTCGATTCCATGTTCCTCCAGTTGAAAGACAAACTTACCCACGAGGTGCTTGTAACCTTCATGGCAGAGGTAGCAGCCATTATCAATGCCAGACCCCTTGTTCCCGTGACTACGGACCCTGATGAGTCGTTCATGCTCACCCCTGCAGCTCTTCTCACTCAAAAGGTGACCTCTGTTGCTGCACCGGCAGGCGAGTTTGGAGTTGCAGATCTGGCACTTGTACTTGCACTTGATCTGGCGGCAAGTTCAACACCTTTCGAACACATTCTGGGACAGATGGAGGAAGCAATTTATACCAACTCTACAACCACGCAAAAAATGGCAGTCCGTTCAACCAAATGTCGTACCAGGAAGTGTTGTCCTTCTCAAAAATAGCCAAGTACAATGGAATGAATGGCCTCTTGGACTGGTAACACAGACTTTCCCTAGTCAAGATGGAAAGGTGCGTCAAGTTGAGGTGAAGGTCATCAAACCAGGAGGCTCGTCCCTTTTTCTTAGGCCTGTTACAGAGATAGTGTTTCTACTTCCACCAGATTCTAAAGTAAATGCAtaatcattaatgttttttgagtGATGTGTACTCACATCAGGCGGGGAGTGTTCTGTTATCTTTaacatgtttattgtttaatctGAGACTTTCCTTTATGCCTTTCGTTATTTGGTCGTGGTCCCTTTAAGAATCTTAGGTTTCGGTATAGAGTTATGCCATGTGATTGAGGAAGCGAGCATGTTCAGCAGAGAGTAGCTTTCGTAGCATTTTTTTGAAGCTTACTGTTATATTGCATACTTCTTGCATCTGTTTTAGCATCGTGGttTCACCTTTCCTCACAACGTCAATAAACCTGTGGACGAGGAGCTTATGTCTTCAGAGTCTTGATGTTAGGGAAAAGTTTACCTGGCTGTCACGTTATATCCAGTACATATAGCAAGGGCAGCACAAGGCCACTGGTGCAGACATGCAGCTACTCAGttgtccaattaatttttttcttacacagacttcctttgccaaagaaagagtcttctagatgagcatAAGCTCTGAATTCACCACCTATTTCCTTTATATTTCACTATTGACCTGCCGTAGCtcagaactgtaaagaaggtaaCGCAtattagcagaggatggtttcgatccatcgacctctgggttatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100482 lncRNA downstream 215454 5141790 ~ 5181500 (-) True G67917
TU100495 lncRNA downstream 296177 5099906 ~ 5100777 (-) True G67928
TU100488 lncRNA downstream 307561 5089182 ~ 5089393 (-) True G67923
TU100476 lncRNA downstream 345662 5050429 ~ 5051292 (-) True G67913
TU100474 lncRNA downstream 369357 5027044 ~ 5027597 (-) True G67911
TU100650 lncRNA upstream 315461 5715341 ~ 5715637 (-) True G68048
TU100655 lncRNA upstream 335044 5734924 ~ 5735172 (-) True G68053
TU100657 lncRNA upstream 335457 5735337 ~ 5735783 (-) True G68055
TU100695 lncRNA upstream 406060 5805940 ~ 5806327 (-) True G68082
TU100773 lncRNA upstream 645235 6045115 ~ 6047596 (-) True G68120
XM_043249337.1 mRNA downstream 2407 5391353 ~ 5394547 (-) True bzw1b
XM_043249344.1 mRNA downstream 27365 5366087 ~ 5369589 (-) True LOC122351925
XM_043249346.1 mRNA downstream 27366 5366087 ~ 5369588 (-) False LOC122351925
XM_043249345.1 mRNA downstream 27441 5366087 ~ 5369513 (-) False LOC122351925
XM_043249340.1 mRNA downstream 47851 5346160 ~ 5349103 (-) True LOC122351922
XM_043249315.1 mRNA upstream 63434 5463314 ~ 5521286 (-) True myo1b
XM_043249316.1 mRNA upstream 63434 5463314 ~ 5521285 (-) False myo1b
XM_043249317.1 mRNA upstream 63434 5463314 ~ 5521285 (-) False myo1b
XM_043249318.1 mRNA upstream 63434 5463314 ~ 5521284 (-) False myo1b
XM_043249319.1 mRNA upstream 63434 5463314 ~ 5521283 (-) False myo1b
XR_006251815.1 other downstream 27365 5349955 ~ 5369589 (-) False LOC122351925
TU100497 other downstream 288567 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 367479 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 382141 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 382219 5010513 ~ 5014735 (-) False dbi
TU100767 other upstream 519877 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 643395 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 699467 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 847020 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 1671105 7070985 ~ 7148620 (-) False LOC122351350

Expression Profile