RNA id: XM_043248541.1


Basic Information

Item Value
RNA id XM_043248541.1
length 2865
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122351463
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5912855 ~ 5931136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTGCTGAACCTGAACGATGACTCGAGTGAAAATGCCGAGGTACGACGCTCGCTCTGCGCGACCGGCACTGCTGTTCATTTTCCGGCGGGTTGGCACCTGCAATGCCAAAGCACCGAGGAACGGTTAAACGACCGCGGTGACGTTGCTTATGTTTCACGGTCTGTGACTGAGATCTTTCTTTTGCCTTCTTCTCTCACAGAGCTGCAATTCAAGGTGAACCTGACACAATCTCTGAACCCTCAGTCGACAAGCGAGCCCACTGAACTGCGCTGTAAGGTGTTCGACCTCCTCCACctccaagatggccgcctgggCGTGACCTGGTCTTACTCTACAAACGCTCCTGGAGATGTATCTCAGAAGAAAATCACTGTAGCCTCCCTGAATGAACAAGGAGCACTGATTGCAGGCAGTCAGTACCAGCAGAGGCTGGACAGTGGGGACATAGCAGTGACCAGGAGAGAGTCTAACATCTTCATTCTGCGAATGCTTCAGACTCGAGACGCAGACATGGGTTCTTATTCCTGTGTGGTCACAGCATGGAAGCCTGCTCAGCAGAGCGGATGGGAAAAAGCAAAGGAGGTCCAGTCAGCGCCTGTCACTGTTCAGTGGACACCAAAAATTCCAGTTTTGCAAGTTGTAGCCCATCGTGTGAGAGAAGCCTCGACAGGAGGATCCACATTTGAGATGAGCTGTCTGGTGACTGGTCAGAGCCTGAAGAATCCCGGCTACTCTGTGCTCATCCGCTTTGAGGAGACCTTGGGAGGAAAGTCCCGCAAAGTGTTGTCACTTAACCAGGACTCAGTCTTGCAGTTAGAGGAGTGGAGCGAGCCGAGCCGCATCGACAGCGTGGTTCTGGAGAAGACCGGGCAGCTCGAGTACCGCTTCCGCTTGTATGGGGCCCAAGTCACAGATCGTGGGTTCTACTATTGTGATGTCACAGCCTGGACACGGGATCAGAGCCAAGACTGGATCAAAGCCGTCAGTGCGGAGTCCAACAAGATTGAGATCACTTTTGTACACACAGGCCCAGTGTTCAACATATCCATTCATTCAGACGCAAACAATGTGTTCGGGGACACAGTCCAAATGAAGTGCATCGTATCCATCCTGGAAGCGTCCCGTTCCACAGGTGATATGGCATTTGATGTACGCTGGTTCCAGAACACACACCAGGCTTTAGATAACGGAGTCCAGCCTCTCATCAGTATGGACCGCTGGGGAGTGGTAAAGAAGACCGGCTCCAATGACACCAGTCTGGAGCGCACTGACCGACACACGTTTGTCCTGAGCTTGCACAAGATTCAGGATAGAGATGTGGGAGAATACTACTGTACCGCCACACCTTGGCTCCTGTCTCCTGCTACTGGTGCCTGGAACAAGGAGAAGGACCTAGCCTCGGCTTCAACATTTCTATCAGTCAAAACAGAATTGTGGGAATCCTTGAAGATGCCAGTGGGATACGGCTTGGCTGCTGCTGTGATCGCCGGTGTTCTCTCTGTGCTGCTGGGTCTTGCTGTTGCTCACTGCTGTTTCTCCAGGAACCCCATACACACGCCCCGTCCCCGTAACAAGCTTATTGACCTAGAGATGGATTAAACCAGTCCCCCTTTTGCACTGCTGTGATCCTGCCCAAACCACTTCGACCGACTTGATGTATTATGCTTTGGGACAGAATATGGATATGTACATTGTTTAATAAGAGATGGAGAACCTGACTATGTGCACTCTGAGGATTGAGCCACTCCAATTGACAGCTCCATATTCCCACTTGGGATGCAATAATACACTTATTATTCTCAGGAATAGAGCCCTGACGGCCACATccaatgtttatttgttttgtttttttcccctgactGCTGATGGGATGAGAGCACCAGGAATTAAAAATTTTGTTGAGTGCAAATTTGGAGCTGCACAATGGCCCAAACCAGCAATGTTACAGTTTTTACGGCTGATTATGAtgattttatagcatttaataGAAAGGACTCTAAAGAGCCAAGAACTTGTCTGTTGTGAGTGTGGCACAAACTCCAATTTTAGATTGACCTTTTAAACCGCCGCAGTCCCAGAGGCTTTGATTGTCACATCGTCGGCGGACATCCGCCGTGCCCCCCACCCTGCCTGCCTGTCAGAGTTATGCTCGCAACAGTAGGGAACCTAATATGACTGACCACAGGCAAAAGGATATATGGCTGATGGATGAGTGCTTCAAGGCTGCACCGCATCATTCTCAGATCCAGAAGTGACCACTCGAGGGAACGGACCAAACAGGCTGTCAGTCCGTGGCTTGGCTTTAAGCGGCCTGCTTTAAAGATCGCTTTAAAGCATTTCAAAGGCCCTGATAACTGATATCCACACTGTTGGCATTAACTCATTCCTCACTCTTTTTGCTGGTTCCAGTTTCCCAAACCTGCATTTTTGTCAGAAAGCACTCATTATACTGACACAACTGACCCGCACTGACGTTATTATTGTAGATCTTTTTGTACAAATGCTCTCTTTATCCACAACGTGGTCAGATAAGTATTTCTGAGAAGGGAAACTGTTGTTATGAGCGTTTTACTGTATCTCAGAGTGAGAGAGCTATGCAGAGCCTCATTTATAGACAAATGTCAAAAGGAATTTCACCAAGATGTTTTATTGTAGTTCATTTATGGATATTAttaaatggatgttttttttcaaagaattattccttttttatttttagttgtgtGAAATTTTATGCGCTTTTACCATCTCTCGcaataagtatttttttctgttttgttattCAATGACTGACATTACTAGTTCTCAATAGCAAACcaagaaaacattatttctcaataataaataaaaaaaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100695 lncRNA downstream 106528 5805940 ~ 5806327 (-) True G68082
TU100657 lncRNA downstream 177072 5735337 ~ 5735783 (-) True G68055
TU100655 lncRNA downstream 177683 5734924 ~ 5735172 (-) True G68053
TU100650 lncRNA downstream 197218 5715341 ~ 5715637 (-) True G68048
TU100602 lncRNA downstream 514716 5397479 ~ 5398139 (-) False LOC122351915
TU100773 lncRNA upstream 113979 6045115 ~ 6047596 (-) True G68120
XR_006251731.1 lncRNA upstream 186715 6117851 ~ 6142682 (-) True LOC122351301
TU100892 lncRNA upstream 310186 6241322 ~ 6241602 (-) True G68189
TU100973 lncRNA upstream 748959 6680095 ~ 6683011 (-) True G68265
TU100974 lncRNA upstream 766550 6697686 ~ 6697893 (-) True G68266
XM_043249311.1 mRNA downstream 13212 5888893 ~ 5899643 (-) True LOC122351906
XM_043249312.1 mRNA downstream 13214 5888893 ~ 5899641 (-) False LOC122351906
XM_043249341.1 mRNA downstream 36464 5875474 ~ 5876391 (-) True LOC122351923
XM_043248540.1 mRNA downstream 37488 5874669 ~ 5875367 (-) True LOC122351462
XM_043248538.1 mRNA downstream 38199 5873593 ~ 5874656 (-) True LOC122351461
XM_043248234.1 mRNA upstream 44000 5975136 ~ 5978878 (-) True LOC122351270
XM_043248543.1 mRNA upstream 138609 6069745 ~ 6087019 (-) True LOC122351466
XM_043248544.1 mRNA upstream 157333 6088469 ~ 6098804 (-) True LOC122351467
XM_043249430.1 mRNA upstream 167935 6099071 ~ 6099912 (-) True LOC122351979
XM_043249183.1 mRNA upstream 387954 6319090 ~ 6477546 (-) False myo16
XR_006251815.1 other downstream 543266 5349955 ~ 5369589 (-) False LOC122351925
TU100497 other downstream 804468 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 883380 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 898042 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 898120 5010513 ~ 5014735 (-) False dbi
TU100782 other upstream 112139 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 168211 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 315764 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 1139849 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 2083313 8014449 ~ 8018105 (-) False LOC122351623

Expression Profile