RNA id: TU100958


Basic Information

Item Value
RNA id TU100958
length 234
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G68252
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6694678 ~ 6694911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACAATCTTACACATGGCAGCTCCAAAGATGAAATCCTCCAGCAGGTTGGGAATAAGAGTGAAGGGCATGCAGAAAACAGCCATCATTAGATCACTAATGGCCAGGGAGAGCAGGAATGAGTTGGTCACCGTCCGCATTCGCTTATTCACCACCAAAACCACAATGATGAGCAGGTTACCAAACACACTCAGCAGGAATATGAGAGAGTACAGCAGTATGCGCAGCGAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100957 lncRNA upstream 2838 6691342 ~ 6691840 (+) True G68251
TU100954 lncRNA upstream 10182 6682624 ~ 6684496 (+) True G68248
TU100953 lncRNA upstream 21028 6673105 ~ 6673650 (+) True G68247
TU100952 lncRNA upstream 94872 6599527 ~ 6599806 (+) True G68246
TU100898 lncRNA upstream 371218 6295288 ~ 6323460 (+) True G68195
TU100960 lncRNA downstream 12930 6707841 ~ 6708193 (+) True G68254
TU101009 lncRNA downstream 212827 6907738 ~ 6943321 (+) True G68296
TU101019 lncRNA downstream 268244 6963155 ~ 6974701 (+) True G68304
TU101024 lncRNA downstream 296922 6991833 ~ 6995856 (+) True G68309
TU101167 lncRNA downstream 504358 7199269 ~ 7199817 (+) True G68405
XM_043248303.1 mRNA upstream 433589 6246813 ~ 6261089 (+) True irs2b
XM_043248545.1 mRNA upstream 501448 6177073 ~ 6193230 (+) True LOC122351469
XM_043248611.1 mRNA upstream 664356 6005352 ~ 6030322 (+) True LOC122351516
XM_043248613.1 mRNA upstream 690326 6002775 ~ 6004352 (+) True LOC122351517
XM_043248542.1 mRNA upstream 692041 5983889 ~ 6002637 (+) True LOC122351464
XM_043249763.1 mRNA downstream 15295 6710206 ~ 6717797 (+) True pdzk1
XM_043248733.1 mRNA downstream 68958 6763869 ~ 6813022 (+) True st6gal2a
XM_043248736.1 mRNA downstream 79570 6774481 ~ 6813022 (+) False st6gal2a
XM_043248735.1 mRNA downstream 88020 6782931 ~ 6813022 (+) False st6gal2a
XM_043248631.1 mRNA downstream 147667 6842578 ~ 6880028 (+) True uxs1
TU100736 other upstream 729798 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 808925 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1237149 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1237415 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1237835 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1646387 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1736234 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 2169738 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 2447681 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 2447681 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile