RNA id: XM_043248373.1


Basic Information

Item Value
RNA id XM_043248373.1
length 507
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122351350
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7070985 ~ 7153954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATAACATGGCCGCTTTCATAATAATTTTGCCTTTGACTTACCTATAGCTTGTTGTGTTCTTTTTGCCATATTCCGGGGCCCACATTTCTCTTAAACTTGCTCGGATGAAAGCTCTACAGAATGCCCAAATACTACGAGGATAAAGAGGAAGACGGCCGAGCCTGCGCTGGAGTGAGAGAAGATTTCAAAGCCTGTCTCCTTCAGCATGACTGTGTACTGAAGGAGGGTAAGAAGCCCAGCGAGTGCCTGAAGGAAGGACATTGCAAAGGCTTGCAAGTGGCTTTCTTTGAGTGCAAGAGATCCATGCTGGACAACAGATCTCGATTCCGAGGCAGAAAAGGATACTGAGTAACACCTTCAATGTGAATAACATGTTTTGTATCAAAATGCCAAGACATGCTCTCAGTTGTGtaaatataatgctttttaaGCAAACCTGTcttgtgaaaaacaaatgactCGTGATgcagttcataaaaaaaaaaaatacagtaagctAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251860.1 lncRNA downstream 111794 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 251758 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 264179 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 334140 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 352780 6793402 ~ 6794375 (-) True G68333
TU101258 lncRNA upstream 179198 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 232659 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 666618 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 671377 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1322232 8470863 ~ 8474578 (-) True LOC122352023
XM_043248360.1 mRNA downstream 29678 7106559 ~ 7117477 (-) True slc9a2
XM_043248370.1 mRNA downstream 49363 7093903 ~ 7097792 (-) True tmem182a
XM_043249731.1 mRNA downstream 156387 6987723 ~ 6990768 (-) True pou3f3a
XM_043249730.1 mRNA downstream 156388 6987723 ~ 6990767 (-) False pou3f3a
XM_043248245.1 mRNA downstream 172247 6969817 ~ 6974908 (-) True gpr45
XM_043248362.1 mRNA upstream 6348 7154979 ~ 7194511 (-) False mgat4a
XM_043248361.1 mRNA upstream 6348 7154979 ~ 7194510 (-) True mgat4a
XM_043248369.1 mRNA upstream 47484 7196115 ~ 7200021 (-) True creg2
XM_043248352.1 mRNA upstream 51639 7200270 ~ 7214956 (-) False cracdla
XM_043248348.1 mRNA upstream 51639 7200270 ~ 7214924 (-) False cracdla
TU100887 other downstream 886086 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1047272 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1103230 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1224335 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1777566 5349955 ~ 5369589 (-) False LOC122351925
TU101496 other upstream 865818 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 930505 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1192312 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2759557 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3284876 10433507 ~ 10441872 (-) False trim13

Expression Profile