RNA id: TU101158


Basic Information

Item Value
RNA id TU101158
length 2644
lncRNA type sense_over
GC content 0.41
exon number 4
gene id G68397
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7280767 ~ 7301495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttttttttttttttttttttttttttttttttttttttttttttttTAGgaagaaaatacagtttattgtCTTTTTGTAGCAGTGGAACAGCTTTTCAGATATGACCCTaccacacatacattcatatcaACAAAAACCTCTGAGATCATCTGGCCACATTCAGGACTCGCCGTACAATATGCATATTATGCCGTTTTGCTCGTTCTCCCTCTTGTTCTTCAgctcacttttctttttttgcctgCATCATCCACATATGCAGTAATGGGTCGTGACAATACTGGGCGTGTGCATGAAAAGCCTGCGGCCATCAGTGAAAATGTAAGTTAGGGAAAGGGATTCTATGAAACTCAATCTGTTTCATAGGCTTTACATGATGtcctgctggtgctgtgtggACTCACTGACGacctgaagagagagaaaaaaaggggaATGATTAGAGCGACGGTGTCTGAATAGGATACAGATGATTCACATGCACAGATGGCTGCATATACATgtagagaaaagagaaaaaagaaaaaggcttaAAGTGAATGGTTGATGCTCAGTAATAAGGAGCAGAGACAGCTGGGAGAGGCATTCCTATAAGTTAAAACAGGCCATTTCCTGCTGGAAATCAATACTGGGCTGGTGCAAGGACGCGTTCTTTGATAAATGAACTTCTCTGTATGTGTTGTGCAGAAACACAGTGATATTCAGCAGAGCAGAAAACAGATATTAACAGTGATACACAAGAGATTTGGAGGATTCTGCAGTGAAACCCAGTGCTGGTTAATAGGGAACAGGACGTTTTTGGAAAAAGACTGTGCAAACAGATGAGCCATGGCTGAACTTACACACTGAGCACTGAGGGCACTCATGCCCTCACTTGTCCTAGTCTAgagtaaaatagaaaattattttgatgattatatGCACCCATACACAgcaggcgtgtgtgtgtttgtgtatatcgCACATATAAGATTAGGCAGCCTGTAAAAATCCATCAGTTACAATAACTGTATAAGCAATTACTAAGCTAGTACacgagtgtttgtttgtgctttttttgttacCTCGCCATCCCGGGTCTCAATAGTTTTGATCAGAACTGTTTTCTTAGAGTGGACTTCAGATGAacgctgttgttgttgttgttgctggtGCTGGTGGTGCTGCTCTGGGCTTGTCTCTATGGCAACAATTCACAACCACGCCATCATTAAACTCATCCTCACAtggtaaatacataaatactgcATTAGTGATATCATCATTAGCTGAGGTGCTCAAACACAACAAAGCAAACAGAGAggtaagtatttaaaaaaacaatggtttTGCGCCCCCTTGTGGATGAAAAAGACAAGCTTTGGCCAAAGATATCTAttattaaagggacagttcatccaaaaatcatttacttactCTCATGTTCATTCAAAGCTACTACTTTTTACTAACTATAAAACCATACAACTATAAAAcgttatacttttttttgtcagtggGCGAAAACAGAAGTGTTGCGTTTATAATTTCGTTTAGTGTATGTTTAGATCTGTGGcagaattaaaaattttttttgtgtgacttGTCTTTTAAGGAAGTGTGAAAGTAGTTTTTCTTGTAAAGAACCCACCTCTGAAACTCAAGGTAGAGAAGGACTGCACAGGCAAGGAGATcctgaaaatacataaaataatcagATAAAATAAACCTTTGTTATATCAGTTACGGAAGGAGCAAGCAATCTAAGTCTGTCTAAATACTTATCTATCTCTTACCTGCTCTCCTCTCCTTCCAGAAGCTTCCTGTAGGTTGCGATCTCCACATCGAGTGCCATCTTAACATTCAGCAGATCCTGGTACTCGCGGAGATGGCGAGCCATCTCGTCCTTCATTTTTGCGATTTCAGCCTCAAGACGGGCAATGGTGTCCTGAAAACCGCCGGCCTCACGACCCATCCTCTCCTCCATCTCCCTCATTTGCCTCATCAAAGACTCATTCTGCGGAAGGAATAGCAAAAAGTTGGAAGAAGTGAGAAGAAATGGCTACAACTAGGGGGAGACTTATGTACAGAGGGAAGAGAGTTGAGATGATGTGAgtggaatattaataataactgcgGATGAGTTCCAGTAGATATTTCTAGTGCTACTGTAGGCCATTACTGGCTCTTTGCTGAATCAAATTTATTCATTGAGCACCTGGGGAAACATATTAAAGACTTCATAATTGGTAATAAGATGGATTCAGGTGTGCTGAGGCTCAGCTAATATTTGTACTGGCTGGGAAATAATAACTCGGCTTACAGCCCATGCACAGAATCTTTAAAGACTTACGGTTCCCTTGAGAGAGTCGATCTCGCAAGTGTAGGACTGGATCTGGTGACGGAACTCCATGGTCTCCATCTTGGCTTGTCTGAGAGCATCATTATTCTTGTTTACCGCCTGGTTCAGATCTGACCTTAGACTTGTACCATTCCTCAGCCTCGGCGATATTCTTGGCAGCGATAGCCTCGTACTGCATGCGGATGTCCCTGAGGGCGGCAGTCAGGTCTGGTTTGGACATGTCCATTTGGACCTGCACCTGACTCTCCTGCATCTGGTTTTGCAGCTCACGGATCTCCTAAAGGAAAAGGTAAACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101189 lncRNA upstream 17054 7262541 ~ 7263713 (+) True G68424
TU101162 lncRNA upstream 21373 7256680 ~ 7259394 (+) True G68401
TU101167 lncRNA upstream 80950 7199269 ~ 7199817 (+) True G68405
TU101024 lncRNA upstream 284911 6991833 ~ 6995856 (+) True G68309
TU101019 lncRNA upstream 306066 6963155 ~ 6974701 (+) True G68304
TU101200 lncRNA downstream 37206 7335491 ~ 7336359 (+) True G68435
TU101216 lncRNA downstream 555196 7853481 ~ 7854278 (+) True G68446
TU101545 lncRNA downstream 905568 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 924302 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 1204471 8502756 ~ 8506143 (+) False igf2bp2a
XM_043249572.1 mRNA upstream 33169 7241336 ~ 7247598 (+) True ihha
XM_043248364.1 mRNA upstream 126801 7143119 ~ 7153966 (+) True LOC122351345
XM_043248154.1 mRNA downstream 6555 7304840 ~ 7328592 (+) True ptprna
XM_043248155.1 mRNA downstream 9679 7307964 ~ 7328592 (+) False ptprna
XM_043249397.1 mRNA downstream 65679 7363964 ~ 7366993 (+) True mnx2a
XM_043248181.1 mRNA downstream 69379 7367664 ~ 7380524 (+) True cfap65
XM_043248182.1 mRNA downstream 69379 7367664 ~ 7379733 (+) False cfap65
TU100736 other upstream 1315887 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1395014 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1823238 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1823504 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1823924 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1043013 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1132860 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1566364 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1844307 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1844307 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile