RNA id: TU101162


Basic Information

Item Value
RNA id TU101162
length 2655
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G68401
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7256680 ~ 7259394 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttaactatatttttattgctgtaatgaacttttaaaaggcaaatttttttttattgagtttactgaaacaaatgaattgtttgatttgatttatttttggaatatgGAGGACTTGCGCACACAAAAGATGAAATATGACAGGATTAACTCCATGTTTATTAGCATTGGTGAGTCAGCAGGATACAGGACTGCAGAATGACTACTCATGGCTTATAGTGGCGCAAAGTGACCCTGGTCACCTCAGCAAGAAAACATCAAGTcactacacacagacacactgctCGTGGATGTAAAGCATGCCCCTTTCACATTCACACTAATTACAGATATAGATATGCTCAGAGAATTTGTACCTTCTGTGACGAAACTCAACAAAACTACACAATGATCACAGCCACGAATGCAACAACACAACAACGCTAGCAAATACCGTAACTGCGCTCAAATACATGAAGAGGAAGTGTTTGTCCGCCAACAAGGACTTCCGATTTAATTAAGAGCTTGCGTGAGAGGTCATTAAAGATGCATTGGCAGCTTAAATAACTCAGTCTCTATACAGATCACTTTGATTTCTCAGTACTGGATACAAAAACCAAGcacgcaacacacacacacacacacacacacacacgtgcttCAAAACTGGTGAAGCGTGGCAAGAATTCCCTCAAAGCTTGGGTCACGTGACACGTCCAGTTAGCGAGAGATCAGGGGTAGCAAgtaaaccaaaaccaaaagcGAACAAGCTCTCATTTAGCACAACAGATGACCGGAGAACCGATATCTCTGCCGTACCGACATATCCTCACTAAACCTGCTCTTGCTCTGAGATTGATGGAAATTTCTGATCCAAACATGAAAAGACCGGAGTATACAACACTGAGAAAGACCCCAGTTAAAAGCCAGTGTAAATGGCACATAGAATCATTTTAACTCTCATTTGTCTcacaatgtacaaaaataaaactataattacaGTGTAAGAGGACTGAATTCATATTATGCATATTCTGAGCCACTTTTGAATGTTGCGCTGCATTAAAAGTCACACAAGTGAGCGCTAACGTCCGCTTTCTAATCGCAAGATGCCAATGTCTCCCGCGTGTCTACGAATACAattcataaagaaataaaaatctgtgCAGAGATTATTGCGTTTCATGTTAAGAAGGACAGAGCTTGTCCTTCGCTGAATAAAAaccgtttttttaataaatgaccgAGACAAATTGTGTGTATATGACTCTGTTTGCACAGTGACGTACAATATCGATCACATAATATCTGAAATGActtcttaaaaaagaaaaataagtggACAGTAATATTGTGTATAAGGTAAAGCTTATAATGAAGGCCAGCACACAggttcatataaatataacctGAGCAGGAGTCCGGGGTTAAATACGTCAGCCTCATTACGGCCACCATTAACTGCGTGTGGAATGAGTACAtacgtttttctgtttgttaatGAGAAGGATAAAATACTTCTTTGACTACGTTAGtctgatttattttaacttttgtgTTCGTTGTTGATTTCAACATGCAAAAAATGGAGCTGGTAGATCTTTGACTCCGAGCAATCAAACTCAGTTTCTATCAAAGAGTGCTTAGCTGTCACATTGGACTATGTAACTGAATGCTGGAATTCACTACATGACTTTTGTACAGATTTTTGCAGTCTAATTTACAGTCTGAAGGAGCTGGCACTAGCTGCTGAAAGTCAGATCCAGTCTGCAGATTGTGGTCAGTCACATTTAAGCTTAGCTTATGATTTTGTCTGATCTGAGAAAATTAACCATTTAGATTTTAGAAcatatattgcttttatttgtctCACATCTCCTAGAAACGAtaagtgtgttgttttctgaacGACTTTAAAATCATCTGTAATTTGTGAGCCTCAGTCATTTAGTGTTTGATCCCCAGCATTTCCGAAAACATTTACAAGAGTGTACAATGCCTAGTGTTTCGTTTTTTTCTGTCCgtttagatttaaaaagtaGTGTAGTGTATTCCAGTCTCGAGAGGAATATTAAtcaccattttaaaataaatacttttcacTTCCACCTGtgacatatataatatatatatatatatatatatcatgcagTTCAAATAGTGCTCAGCATTAGACTACAGAGACCGTTTTCTCACCAGTTTGTTAGCTCATCTGGGATACGACTTCCACACAAAATGGGACATGATTAAGAATGTCTAgtctaaaaatatttgcagCGAGGACTTACTTTGGGTATATTACTCcatctattaaaaaaagcaaaactagtTAACAGAATACcacttattttttcaattttctttcCAATCTTCTTATATATGCACCGTGATAAATACGAGACACGGTGACAACAACCTGTCAACAACTTCCACACAAACATAACCAGCAGATTGCCTGTGGCTGTGCATTTGTTGGtgtagtacagtttttttttttaatctgcatttTGAAGGGAAGCAATAAGGAGTTATATAGAAGGATTAACAACAGGTCAAGCGGATCACAGGCTCTCACATCCTCTGGGTGAAGTTTTCAGGAAAGACTCCTTTCTTTCCAAGAGCTTTTTGCAGAATCCAGTCGGGCTCTTTGACTCCCATTAACCACCCTTCATCCTGA

Function

GO: NA

KEGG:

id description
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101167 lncRNA upstream 56863 7199269 ~ 7199817 (+) True G68405
TU101024 lncRNA upstream 260824 6991833 ~ 6995856 (+) True G68309
TU101019 lncRNA upstream 281979 6963155 ~ 6974701 (+) True G68304
TU101009 lncRNA upstream 313359 6907738 ~ 6943321 (+) True G68296
TU100960 lncRNA upstream 548487 6707841 ~ 6708193 (+) True G68254
TU101189 lncRNA downstream 3147 7262541 ~ 7263713 (+) True G68424
TU101158 lncRNA downstream 21373 7280767 ~ 7298285 (+) True G68397
TU101154 lncRNA downstream 38639 7298033 ~ 7301495 (+) False G68397
TU101200 lncRNA downstream 76097 7335491 ~ 7336359 (+) True G68435
TU101216 lncRNA downstream 594087 7853481 ~ 7854278 (+) True G68446
XM_043249572.1 mRNA upstream 9082 7241336 ~ 7247598 (+) True ihha
XM_043248364.1 mRNA upstream 102714 7143119 ~ 7153966 (+) True LOC122351345
XM_043248367.1 mRNA upstream 102916 7149931 ~ 7153764 (+) True LOC122351346
XM_043248365.1 mRNA upstream 102916 7149931 ~ 7153764 (+) False LOC122351346
XM_043248366.1 mRNA upstream 102916 7149931 ~ 7153764 (+) False LOC122351346
XM_043249056.1 mRNA downstream 11968 7271362 ~ 7291542 (+) True tmem198a
XM_043249055.1 mRNA downstream 11968 7271362 ~ 7291542 (+) False tmem198a
XM_043248154.1 mRNA downstream 45446 7304840 ~ 7328592 (+) True ptprna
XM_043248155.1 mRNA downstream 48570 7307964 ~ 7328592 (+) False ptprna
XM_043249397.1 mRNA downstream 104570 7363964 ~ 7366993 (+) True mnx2a
TU100736 other upstream 1291800 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1370927 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1799151 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1799417 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1799837 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1081904 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1171751 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1605255 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1883198 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1883198 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile