RNA id: TU101356


Basic Information

Item Value
RNA id TU101356
length 2542
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G68555
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7815249 ~ 7818832 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTTTGTagaaaaatatcactttattgTAACATTCCATACAACATTTCCAAGACCACGAAATTCAACAGGCTAAAATATACctcatactgtatgtatttaaacaggCTGAAATGCTGTCatagagagaaaataaaaagcttataTAGATGTCGGGGTCAAAGCCCCACATTCACAAGGGACAAAAAAGTGCACACAACAACAAACCCATCAGAACTTGTATGCAAATTAAGCATAATGTCGACACAATGAACATCAAAAAGCCATGTTCAGTAAACACGATTAAATGCTTCATAGACAAACTGTTTTAATCAAGTTCAAATTCtgtagatggatttttttttacttttttatgcaaaacataaacAGTTTACAACCTGGAgtattttttgcacattaaaatTCAGTTTCTCCAGACAGACACTTTAGACGTCTACCGCCTTttcctgtctctgtctctgaggAGGGGTGAgagcatatgctgttttgtgCAGGTACTATCAGAGACAGACTCTTGGCATCATATGAGGCCCCTCTGAGTGCTTTTGCTCATTAATATCTTTGGAGAGACAGCAAAAGGAAAAGACTCCCAGCAAGAATGCTTACAACgggtttaataaaatgtaatctggTCCATTACCTaattagaaatatgaaaagGTTCAAAGGAAGTCTCGGCCACAGTAGATTGAAATACATAATATGATCAGCTGACATGTCATTTTTAAGCAACTCTGATTAAATAGCAAAGAGAAAAACTgagaatgaaattaatttaaattaattactacattcaaactaaacaaaatatagaGTCACAACTTTTTAGAGTTAAAAGCTtgatataaattcatatattaatCACACAAACAAGTAAGTCAAATGGTATAATTGCTCAAGACGAGACAAGACAGACACATTTGGCATTTGTGTTGATACACATTCAACTGGGGGGCACAGAAACTCATAGAAATGTGTTGCATATTGCAAATTCTGCCTTAAACAAGCGAGAGATTGCACAATATGGCGATGCAACAGAGACCACATGACTCAAAGCTGAGCTGAATTGATGTCTGGCGTGAAAAGCTACCGTGTGTCCCATCTCCCCAGAACACACTCCACTGTATAGAGGATTAGGTGGGAAAGGGGAGACAATGCTTTACAATGGGCCTGCCGGGTCAGGTGGTCTCTCTTGCTGTCTGCGAGGATCTTTcatgtgcttttgtgttttaaacaaaCCCCTTCAGACCCTGGGTTTTGCAGAGGAGGTCTATATTTAGAGCATGCTTTTCTTTGATCTCGCCTTCCATCTCCCCACACATTCTTTCGCGAAGAGCAGATAAACGGGCGAAAAAGGGCCAGCCTGTCCGTGATGGGGGATTATTTTCACCTATTGCCAGATGGAGGACATAACAAGATATCAGGATTTACTTTCTCCTTTCATCCCAGTTGCTTTAGATGAAGCCAAAATCTGACGTGCTCGCCTGACAGATGCTTTCAGTAATGGATGAATCCTTAGAGTCTTTATGTGTAAAgaggaaaatgttttgttgggCGGAATTTCCACCCTGAGCTCTGATGgcgcctattttttttttgtgtttgtttggtaCAGAGGAGAACACTGAACACTATGTACTTGGACAGAACACTGCAGACCATAGCATGGTTTTCTTTTCAGAGGTATAGCGCTTCGTTTCAAGTGGCACATGAAAGAGATCAAGCAAATACTCGCACCGGGACACAGGGAAAATTATTTTGAAGTGCATTTGGAAACTTTCTTGTCAAACTCCTCAAGCCTCAAGTGTTCTTATGTGCACATGAGATGCGGCACACATGCAAGGAAAAGTTTTCCTTTTTGTACAGATTCCTCCCTCTCGACGCTGTTCACAGGTTCTCCTTAGAGTTTGGCAATGCTGCCGAGTTCTCTTGACTGTACAATAGGATTGGTCATGAACAGGAGATTAGAGCTTTTCACAGTAAGTTTCCCAtcgacagacagagagaaagagagagaggggggggagGGGGGCCCTGCCAGTCAGGATTTTGGCTGGATGTCCCTTCGGCACAGCAGATCTCCTCCTTCCCAGTACTGGAGCTCCATAAAAGAGTCACAGAAAACTCGACAACTCTGGTGCTTACGTGTCCACATCTTTTTCACCTCATCCTCGACTTTAAAGGACACTACCTAGGTGTCCTGCGGGAGGAAGCGGTTCATTGGTGTCGTCTCAACACTGGGAGCAGGGCTCTTGCTTCTCTAACCTAATCGTTAGCATCGGCTCCACCCCAGGTCCGGAGAGACCCCCAGGGCCGCCGCCTGTGTACTGTCCCGTGTACGTGCTCTGGTAGGACACCGAGTGCTGACTCTTCTTGGCCGCCAGGTGGTAGCGATGGCAACACAGCACCATGACCAACGTGACGCAGCCCAGGAGGAAAATGGCGCCACCTCCGGCTATTACGTAATACCAGTAGGTGGGCATGGGCTGCAGGGACACTGTCGTGTCAACAGTGGGGTTGCTCCTGCCAGGTGAGGCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101275 lncRNA downstream 433741 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 473755 7327829 ~ 7341494 (-) True G68473
TU101108 lncRNA downstream 661295 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 661295 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 779888 6982678 ~ 7035361 (-) True LOC122352164
TU101355 lncRNA upstream 1176 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 652031 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 942939 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 975029 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 983553 8802385 ~ 8805405 (-) True G68830
XM_043249676.1 mRNA downstream 465833 7347110 ~ 7349416 (-) True LOC122352131
XM_043249674.1 mRNA downstream 465927 7347110 ~ 7349322 (-) False LOC122352131
XM_043248156.1 mRNA downstream 468963 7343107 ~ 7346286 (-) True tuba8l3
XM_043248157.1 mRNA downstream 478863 7330104 ~ 7336386 (-) True dnajb2
XM_043248159.1 mRNA downstream 478866 7329082 ~ 7336383 (-) False dnajb2
XM_043249596.1 mRNA upstream 62346 7881178 ~ 7892408 (-) False si:ch211-67e16.11
XM_043249595.1 mRNA upstream 62346 7881178 ~ 7892408 (-) True si:ch211-67e16.11
XM_043248744.1 mRNA upstream 119220 7938052 ~ 7947803 (-) True si:ch211-67e16.4
XM_043248746.1 mRNA upstream 120966 7939798 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248745.1 mRNA upstream 122301 7941133 ~ 7947805 (-) False si:ch211-67e16.4
TU101110 other downstream 666629 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1554180 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1715366 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1771324 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1892429 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 195617 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 260304 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 522111 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2089356 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2614675 10433507 ~ 10441872 (-) False trim13

Expression Profile