RNA id: TU101545


Basic Information

Item Value
RNA id TU101545
length 1839
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G68668
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8203853 ~ 8205963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGCTGTGAGCCGCTGCTTTCATCAAGCTTTGCGTTGCTCCTCAAACAAAACGACAACAAACCAATATTCCCAGCTTCAGAGGAATTTGACTGAATCAAGATGCTGCTGATCACTCAAGCTCTTCTTCTCATTGTAGCTGCTCTAGAACAGGATCCCAGAGCTGCTGTTGAAGGACAGATATATCCGCTAGATATTGATCGTACCCTCGCAGAAGCTTTCGGAAATGCgtcttgttttgtatttaaactaTTTCACAGGCTGATTTTGGTCCTTTGCAATGAATATACTGAAAAGATTATAGAATTTGGAGTACAAAAAGATTCAAATGAAGTGGTAAAGGGGATTTATCTTTAGGAGCTGCGCCCTCTGGAGGACACACGGGAACCCACAGGCCTCTTTACCTGCTTGCCAGTGAGGAAAAGGTTATTCCATTTAAGATATTTCcgcaggtttattttattctttttatgtgATGCATTTTCAATCATTCATAACAGCCAGTTTTATCAGCTCAGTTTCAGACAAGAAGCATTTTTACAGGAATTCTGGTTTCtttgttttcacacacattaaaaaagtcatattaaaaaaagtcttagaTTTTAAATGGATCAAacagtgtaataatattatatctaAGACTtccatttgcattatttatgcatgaTTATGAGAGTAGTAGAGATGAAAATAAGGACTACATTAATACTACTTTTTTGTCCGGAGCTTGAAAGATTTGTCCggtgtaaatatttaatcatgtgtttattaagtattttttttaaatattaatttaacatctTTGTCTGGACCTGTGTGTCATGATGTCTGCAAGCATATAATAAACAGACTGAACTGTAATAATACAGAAATTACAAGTACATACAcggtaactttttttgtttgctatattattcatcaaaatatacattaataacaattcaaataaaaatgacagaattaagcATCTTAcctatacacaaaaatatataaatctaatgtcaattttatttttgtaattattaatgaagAAAATACTGTTATTCAGTGGATTAAACTGAAAGATCCTGATCGTCGTCACACACTGTTCGATGCGGATGTAACTTCTTCCAGCCcaacacctttaaaaaaaaccataaaGTCATAAAATCATTACAATCACTTTGCAATCAGTGTGTAGCATATCTACTTAGTGTATATGTCAATATGTACCTTATTTAATTGTTTCAAGTCACAtcctacatttttttctctattaCAATTCAGTTTCTCTTGCAAATATGTAACATTACAGAAGTAAAGCTGTGAAAAGCGTGTTAAACTGACTTCGATCAGAGAGATTCTGTCACCTGCAGTGTATATGAAAGCGGCTTACCCTCAAGATCATTTTTGAGCAACTGAGCTTCTTCCCTCAGTTCCTTCACAATGTCTGGAAATTCTTCCTTGATCCCCTCAAAATGTTGTAATGACAAAGAGAAGACACTGCAGGCGGTCAGGGCTGAAACTGAGGCCAGCTGTCTTCCACCGAACAGGAAGCTGAtctctgcagaaacacacacaccgagTATGAGGACGGTTGGACCGGACTGGTGCTGATGTTTCAAAGATCACCTTTGAACTAATCGCTAGATCTGGGTCCAAATGTATACAGTAATCTGCACAGAAGGCAAATAGAGTTATAGTTATAAGTAATGgtcctaaaatataaatatatagagagtTTTCACAGCTCTTGCATATTgcttttttgttggttttgattgctaTTGTCATCATGTGTACATCGCTTTGGACAAAAGAGTCTGCGAAgtgaagaaatgtaaatgtaaaaataaaa

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101216 lncRNA upstream 349575 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 867494 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 902358 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 905568 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 940140 7262541 ~ 7263713 (+) True G68424
TU101562 lncRNA downstream 16624 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 296793 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 394761 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 620249 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 653510 8859473 ~ 8860379 (+) True LOC122352063
XM_043248190.1 mRNA upstream 917 8176835 ~ 8202936 (+) True LOC122351256
XM_043248191.1 mRNA upstream 917 8176835 ~ 8202936 (+) False LOC122351256
XM_043249764.1 mRNA upstream 30890 8170166 ~ 8172963 (+) True fzd7a
XM_043248834.1 mRNA upstream 185966 7962407 ~ 8017887 (+) True raph1a
XM_043248743.1 mRNA upstream 265351 7921678 ~ 7938502 (+) True fer1l6
XM_043249064.1 mRNA downstream 135332 8341295 ~ 8342751 (+) True si:ch211-167j6.3
XM_043249065.1 mRNA downstream 135332 8341295 ~ 8342751 (+) False si:ch211-167j6.3
XM_043249059.1 mRNA downstream 137259 8343222 ~ 8349525 (+) True ankzf1
XM_043248896.1 mRNA downstream 160699 8366662 ~ 8426929 (+) True myo10l3
XM_043248897.1 mRNA downstream 160699 8366662 ~ 8426929 (+) False myo10l3
TU100736 other upstream 2238973 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2318100 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2746324 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2746590 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2747010 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 135335 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 225182 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 658686 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 936629 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 936629 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile