RNA id: TU101608


Basic Information

Item Value
RNA id TU101608
length 615
RNA type TUCP
GC content 0.45
exon number 5
gene id si:ch211-167j6.3
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8341295 ~ 8342751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTTAAATTTGTGCGATGAACGGGGTACCTTTTGTTCATAAAGTCGGTCGGTATTCAAGAAAACGGTTTGCTTCGCCGTTATGGACACCCCACAAAACTCTTTAAACACCACCTTTCAGGACGATGAAGAAATACAGGATTTGTTAAAACGCCTCAAGGATGCCGAAACGGAACTACAGCGTACTAAAGACGAGGTGGAGCAAGTAAACAAAGATGTCAACGAATGTAAAGAGGAGATGGAtcggaggatgatgatgatggtccAGATGGATGAAGGCCTGTGGAATGCATTGCTTGAACTGGACTCTCTGATGCAGGAGAAGAAAAGCCTTGCCACTCAGCTAAAAGAATTAATTTTATCTAGTGCCATAGAGGTGAAGCAAGCGCTTCTGAGAGGTTTGCAGGAAGAGGAAAGcgtcctgctggagcaggagcgTAGTCTGAAGCTCAGACGTGAGCAGCTGAGGAAAACACTGGCAGAAGCCTcagaaaaaacagaagaagTTTCACAGGGTGAGAATCCAGTTAAACCAGGCTCATCCAGCCGGAGTAAGCCCTACAGAAAAGCCAGTGAGAAAAAGAGGGACACGGAAATAATcacatggagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101562 lncRNA upstream 118481 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 135335 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 487020 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1004939 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 1039803 7298033 ~ 7301495 (+) False G68397
TU101678 lncRNA downstream 160077 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 258045 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 483533 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 516794 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 524460 8867139 ~ 8868277 (+) False fev
XM_043248190.1 mRNA upstream 138362 8176835 ~ 8202936 (+) True LOC122351256
XM_043248191.1 mRNA upstream 138362 8176835 ~ 8202936 (+) False LOC122351256
XM_043249764.1 mRNA upstream 168335 8170166 ~ 8172963 (+) True fzd7a
XM_043248834.1 mRNA upstream 323411 7962407 ~ 8017887 (+) True raph1a
XM_043248743.1 mRNA upstream 402796 7921678 ~ 7938502 (+) True fer1l6
XM_043249059.1 mRNA downstream 543 8343222 ~ 8349525 (+) True ankzf1
XM_043248896.1 mRNA downstream 23983 8366662 ~ 8426929 (+) True myo10l3
XM_043248897.1 mRNA downstream 23983 8366662 ~ 8426929 (+) False myo10l3
XM_043248125.1 mRNA downstream 85167 8427846 ~ 8430614 (+) True pttg1ipb
XM_043249725.1 mRNA downstream 88432 8431111 ~ 8433483 (+) True sumo3b
TU100736 other upstream 2376418 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2455545 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2883769 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2884035 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2884455 5456772 ~ 5456843 (+) True trnam-cau_111
TU101615 other downstream 88466 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 521970 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 799913 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 799913 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 1100446 9443125 ~ 9556647 (+) False thsd7ba

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_00227074_00228057.mRNA True 640 mRNA 0.41 4 CI01000037 227013 ~ 228057 (-)