RNA id: XM_043249496.1


Basic Information

Item Value
RNA id XM_043249496.1
length 4736
RNA type mRNA
GC content 0.45
exon number 16
gene id igf2bp2a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8460744 ~ 8506143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttcaatcccaGTAAGAGTTTGAGCAGGAACAGAGTTGTGTTCATGTAGCAGGGGGGTCCGGCTGCATCTGGGGGGTGACCGCTGATTTTCAgcacgtttattttatttttttctattttattttaccctTATTTTCCCCACTTCGAGCAATCCGCTGCACGCGCGCGCCGATATATCTGGACGTACAGCTCTTGGTATAGACCATGAACAAACTCTATGTGGGGAATCTGAGTCCTTCGGTGACCGTGGAGGACCTGAAGCAGCTCTTCGGCGAGAGGAAGCTTCCCGTGACCGACCAGGTCCTGCTCAAATCCGGCTATGCCTTCGTGGACTTCCCCGACCAGAACTGGGCGATTAAAGCCATCGAGACTCTATCCGGGAAAGTTGAATTGCATGGGAAAGTGATCGAGGTCGACTACTCTGTTCCGAAAAAACTACGGAGTCGGAAGATTCAGATCCGGAACATTCCTCCTCATCTCCAGTGGGAGGTTTTGGACAGCCTATTAGCACAGTATGGTACTGTAGAAAATGTGGAACAAGTTAACACTGATACAGAAACTGCAGTGGTGAATGTGACATATTCAACAAAAGAAGAGGCTAAAATAGCTGTTGAGAAGCTAACAGGACAGACGTTTGAGGATTACTCCTTTAAAGTGTCTTATATTTTGGATATGGATGCTGCTCCGTCTCTGCCTGCGACCCGGAACCGTCGGGGTGGAAGGACATCACGGGAACAGGACTCCCAGCCCGGGACCTCCGCAGGCTCCCTGGGGCCCCGACAGAAACAGCCAGACTTCCCCCTGCGCATGCTGGTGCCCACACAGTTTGTGGGAGCCATCATTGGCAAGGAGGGGCTCACAATCAAAAACATCACCAAACAGACACAGTCcaaGGTGGACATCCATCGTAAGGAGAACGCGGGAGCGGCAGAGAAACCAATCACCATCCACTCCACTCCTGAAGGCTGCTCCGCTGCATGCCGCATGATCATGGACATCATGCAGAAAGAGGCTGATGACACGAAGGTAACTGAGGATATTCCTCTGAAGATCCTGGCCCACAACAGTCTGGTCGGAAGACTGATCGGGAAGGAGGGCAGGAACCTGAAGAAGATTGAAGAGGAGACAGAGACCAAGATTACCATCTCCTCTTTACAGGACTTAACTATTTATAACCCAGAGAGAACCATTATAGTGAAGGGGAGTATCGAGGCCTGTTGTAGGGCTGAAGCAGAGATCATGAGAAAGCTGAGGGAAGCCTATGAGAATGACATTGCTGCTATTAACCAACAAACCAACCTTATCCCTGGGTTAAGCCTGAGCGCACTGGGCATCTTTTCAACCGGTTTGTCAGTATTGCCACCAGCTGCTGGGCCCAGAGGCGTCCCACCCGTACCCCCAACTGGCTACAACCCTTTTCTTGGTCACTCATCACAGCTGGGTGGGCTTTACGGTGTCCCGCCTGCTAGTGCCATCTCTCACCAGCACACACAGGCTCCTGAACAGGAGGTGGTCTACCTCTTTATTCCAACTCAGGCTGTCGGTGCTATTATTGGCAAGAAGGGCCAACATATTAAACAACTGGCACGATTCGCGGGAGCCTCTATTAAGATCGCACCCGCAGAGAGTCCTGATGTCACTCAGAGGATGGTCATCATCACTGGCCCGCCAGAAGCTCAGTTTAAGGCCCAGGGCAGGATATTTGGGAAACTAAAAGAAGAGAATTTCTTTACTGCGAAAGAAGAAGTGAAGCTGGAAACGCATATAAAAGTGCCCTCTTCAGCAGCGGGGAGGGTCATCGGGAAAGGTGGCAAAACGGTGAACGAGCTGCAGAACCTAACCAGTGCAGAGGTCATAGTGCCACGGGACCAAACCCCAGACGAGAACGATGAAGTCTTTGTCAAAATTAGTGGGCATTTTTTTGCCAGCCAGACTGCACAGAGGAAAATCAGGGAGATCATCCAGCAGGTGAAACAACAGGAGCAGAAGCACCAGCAAGGCGCCCCCGTGACACACCGCTCCAAGTGACCATCAGGCCAGCCCCAGCGGGCACCTGCCAATGAATGTAGCCCTCCCAACTGGAatcagaccagaccagaccggACGAAGGGGACCGGCCGGGCAGACCAGCAGCCGTGGGATCAAAACCAAAGAACTTCTTTCTGGGGGAGATGAAGGAGCCGCAGCCAGAAGGGCTCTGAGTGCACTGCCAGCTTGGGGAGGGAGGGGGAGGAAGCGCAAGAAGACAAGTGTTCCTTTTGTCGTTCGAACACACCCTGAGCTTGAGAAGAATAGGTATGGGGCGTCTTGTTATCAGGACAGGAAACATCATGGTCGCCCCACGTAACAATTTCTTAACCATTTCTATAAAATTCTTAATTTAGGCTTAATCTAGGGTTAACACAGATAAGAAGCTCCATTAACACGTGTACACTGATGCATTTTGACTgagttgtgttgctgttttcTCAAGTAGGTAAAGTGTGGGTGTGCACTAGAAGTTGGCGAccgatgatttttttttttttttttttttttttttttttttttgacgctCAGATTACGATTTCAGTGATTCTCAGACGTATTCTCACCAGTACACTAGAACAAATATACTATTATATCTGAAGCAGAAGCACGATTCTTCTTGTTTTGCACAAGCCATCGGGCGTGTAGTGCACATATGCGTACGCATATAACATTGTTTTTTGATGATGATGGGACAAGAAAGTTGGGAAATGTAAATGACAGAACGTATTCATATCTTAGCCTGTATACATTTCGGGAAACATCATCCAGCTCAACGGATCCTTGTTACTTAGCCCGTGCGTGCCAACGGATGCCGTTAAAACCTTTCTTTCTGTgcatatctttcttttttttttttaagcttttatcaTTTGTAGTTTGTTCTTGTTTCTGTCCAGCTCTTACACTCCCTTTTGATTTTTACGCCAGGGTTTTTGCAGCCTCtgcattttagtcatttcatCGCCACCGCATTCTTGTGGCGGTGGTTATTACAAGACGGAAGTAGGTATGCGGTAGTGACTTAGGAGTCAACACCCCTTGTTTGCTTTTGGGGGTATGAAAAGAATATAAAGCAAGCACCAGCGTCTGAAAGACAGCGCACCTTTACTGGCTCGGGCAGAACGAAATCGAATGTGCACCAAGAACTCTGCCTTAATCTATGctgaaaggaaatgaaaaaacGGGCGACTCAAAATGTGATTGGAGGGTCAGGTTGATGTGGGACGGGGAGGCACCTTATGACCTGTGGTACACACACGACCGCGTTTGGCTTTAAATCTCTTTGTCAGGGAGCTTTCTAAACTGCATGACAGCTGTGAATGTACAATAAGCAGCCTTTTAGAAAGAGCGCCACCCTGTCATGTTCAGTAAGCTGATTGGTCAGCGAGATcgttattgttttgatttttttttttttaagcaactgATTGACTGTTTCAACAGGCATGGATATCcctttgtgctttattttttattttcttctttttgaccATGGAAGCTCGTGGCCTTAAACGTCACCGGTCTATGTCATCACAGACAGCTCCCTCGCCCAATGAGAGCTAAGCCTCATCTTCCAGACGCAAGGTTCATGCCAATACGCACAGCTTCCatttgtgtgtatgcgtgtgtgtatatagatatatatataaagagagagaaatatttatgaatctattttttttcctattttgtgACGAGAGCTATtaataagaaacaaacaaaaaaaacaagttttttttttttttttggtggaacACTGCCATGTTATTCTGAAGGGAAGTGTTTATTTTCTCGGAAGTAGACTATGAATATTGATAGTATACTAACAGTAAGAACAGTAATGAATCACCGCAACACTTTGATCAGAATATGATCGGTGCGCATGTCAGTATTGTGATCTACCTCAGGCGTCAGGGTACCTCAGTCCAATCTTTtaagttccctttttttttttctccccacaTTTTGTATGCCTTGTAAACTGAAAGTTTTGAACATgttcttttaataattataataataataataataataataattaaaaaagatcaAGGAAAAGATCTAGTCTGAAGTATTCAGGTCCATCTGACAAAGAAGTATAGATCTTAAAGCTTTCGAAACTGTATGCGAATttacttcattatttttacCAATTACAACCTCGTGATTTATTACAGAATGTGTAACTGAGGGGTACTTTCCTGCCCGAAAGGGGTTCTTAATGTGGATACTGTGTACTGATGTCTAGATCAGTGACGAATGGTTAAAAAGACTATCTTccgttttcacagacaaggtttAAACCTAGTGCTAGATTAAATGTAAACCGAAAGAGACTTGccctgactgatcttaaaacatgtcagtgcctttgttttgtcttaagatgcacatcAGTAACGCTTTTTTTCAAAggcttgtttataaaaataactcaACTGAACTATGgtctaatcctggtttaggctaagccctgtctatgaaaccgggCCTGTGAATATCAAGCAGAATTGCTTAATTCGAAGCATTCTCCAGGAGCAACTGCGCTGTCTGAAGCGCAAGCCAGCTTtctctttacattttataaaaacgaGTCCAAATTCAGGAATTACAGTCAGaccaaattttttaaataattagttttttttttttttaaatcaaggcctttcacaaaagaaaaaccatgttgatataaaaaaaaagt

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K17392 IGF2BP2; insulin-like growth factor 2 mRNA-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101562 lncRNA upstream 237927 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 254781 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 606466 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1124385 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 1159249 7298033 ~ 7301495 (+) False G68397
XR_006251751.1 lncRNA downstream 95928 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 321416 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 354677 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 362343 8867139 ~ 8868277 (+) False fev
TU101845 lncRNA downstream 542664 9047460 ~ 9078537 (+) True G68879
XM_043249449.1 mRNA upstream 1419 8453605 ~ 8459325 (+) False tra2b
XM_043249450.1 mRNA upstream 1419 8453606 ~ 8459325 (+) False tra2b
XM_043249451.1 mRNA upstream 1419 8453613 ~ 8459325 (+) True tra2b
XM_043249452.1 mRNA upstream 1926 8453604 ~ 8458818 (+) False tra2b
XM_043249453.1 mRNA upstream 1940 8453604 ~ 8458804 (+) False tra2b
XM_043248712.1 mRNA downstream 5916 8510712 ~ 8519346 (+) True ehhadh
XM_043248716.1 mRNA downstream 16138 8520934 ~ 8528871 (+) True zgc:162707
XM_043248052.1 mRNA downstream 61658 8566454 ~ 8569997 (+) True nup35
XM_043249719.1 mRNA downstream 146371 8651167 ~ 8702295 (+) True znf804a
XM_043249543.1 mRNA downstream 288521 8793317 ~ 8797935 (+) True zc3h15
TU101615 other upstream 27261 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 118065 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2495864 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2574991 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 3003215 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 359853 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 637796 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 637796 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 938329 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1823935 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile