RNA id: XM_043248266.1


Basic Information

Item Value
RNA id XM_043248266.1
length 2598
RNA type mRNA
GC content 0.44
exon number 4
gene id fev
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8867097 ~ 8871633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAAGTGTGCCACTCGTTCTTAGTGCAATGATTGTAAGACAGACGAGAGTGCTGAGAGCAGCTGGATGTGAGGCAGGCTGCGGTCCGACGGGACGGGGCGCGCGCACGAGCACGAAGCAGCCCCTCGTCGCGGACAAACGGAAGACCCTCCTCGCATCCGGGGCTTGTTTTAAGTTGCCTGCGATCTATTTTAATGACTCAGGCAGCTAAAGCAAGTCTGGGACGCCAGAGACAACACGACGATCACCTGCCTGGCGTATTTCACGACCATAAGACTCTTTACTCTTCATTGCCAAACATTAAGGCCTACTTGtgttgttaaataaattgtagGCAGTCAGCGTTAGCATGTTCACCTGgcacaggaaaaaataaataaaataaaacatttttcttctaTTTGGGGTTTCGTTACTTTGCTAGTTGCAATGTCTTATGAATTATGATCACATAACCCAATCTGTactactgttgttgttttaacagtTCGCGTTCAGAAATCACAGATTTTAATTTATCATAGGTTGTATATTtgttaagatttgttttttttttttttttttagaaagaggTAGGCCTACATTAAATGTACATGCAATTCAAGGGCATGCATGGTGATAGCGTGTCATCATTATGACAAAATACCATTCTCGCTGTTTGGAAATATATATAACGCGAATttataaaagtgtaatattagGCGCTATATCAAAAGGAGCATGCATTATGTAAGAGCGCGGGAGAAGCGATCATAAGGCAGGGCAGAGGCTTTACTACACCATCTATTGCTCATTAAAGCAGCATAAGTTTGGGATAAAATGTTCTTGTTTACCATTATGCACTGAGGCATGGTTAAAAGGTAAATATTCTCAACCAACATGGAACAGGCCTTTCTGTTTGCAAAGAGGTAAAAAGGCGGAAAAGAAAAAGGATCTGAACCGGTTTCCATGTCAAACACTTCAATTCTCCATAGAAACTCTGATCTTAACGCAGAAACTTTATTAAACCTTGATGGTGGATTGATAAGGCCGAATTTCTATCGGTTCCTTTTTATTGTGGAGACGGGGAGGGATGACAGAGGTAAATTGCTCTTTTAATTAAACCAATGCACCGAAGGAAATTGCTGTCTGAATATTGTCTCAGAGATGGGGCTTGTGACAGTTGCCTGGAAACTTCAATCTGTCTCACATTTATTCCAGATCACAGTTTTGagataaagtttaataaaaatctttgcGCCAATGAAAGCCTACCCTTTCACGTCCTCCACCGCCAGCACAATGCGACAGAACTGCGGAGGAAGCCTTATGTTTAACATGTATCTCTCAGACCCTACGGAAAATCTTTTGAAGGAAAGCAAAAGCTCCTCTTGGACCCCCATCAACACAGGAGTGCAGAAAGGCAGCGGCCAGATCCAGCTATGGCAGTTTCTTCTGGAGCTGCTGTCTGACAGCGCCAACATGACCTGCATCGCCTGGGAGGGCACCAACGGGGAGTTCAAACTGATCGACCCGGACGAGGTGGCCCGGCGGTGGGGGGAACGCAAGAGTAAACCGAACATGAACTACGACAAACTGAGCCGAGCTCTGCGCTATTACTACGACAAAAACATCATGACCAAGGTGCACGGAAAGCGATACGCGTACAAATTTGACTTTAACGGCCTGGCGCAAGTGTGCCAGCCCTCCTCCACTGAACAAGCCATTTACAAATTCCAGAGCAACTTCGCTCCCCTCCAGTTCTCCGGCATTTCCAAGCTCAGCCTGGTAGCTCCGGGCGCCGGTCCGTCGGGGTTCTCGTACTGGCCCGGATCTCCCCCGACCCTCTATCACAGCCACAACCTGCAGCCGCCGGGAGCCTTCGGCGCCGTGTCCGCCTCGCACATAAGTTGCGTTAACAACATCAACAGTTTAAATAACCTCAACAACATCAATAGCCACTATAACTGATTTTCCTTTCATTTGCCGCAGGAGCGCGAGCTGATAGACTAGTCTGCGCGAGGCTATATTCAAAAGCGCGAGCGATTTCAACGTTGTAGGCTATTATTGCTATCATgccccagaaaaaaaaaaaaaaaaaagagagaaggatGATTTGGGAATCGCGTTTGGTGGAGTTTTTAATGTCGATCGCTTAAAGATTGCTTAAAAAAAGCGATGTAGCGCCATCTTATGGAAAACATAACGCCGTCGCTGGTTAATTTGTCGTTAAAGTCAGCCGGATAACGTAAAGTCTCCGTACTCTGCGGGAGGGAAGAAGAAATGAGCGCGATGGTGGAGAAAACGCTACACGGTATGAGAACAAATGGTAAGAAGCAAAAATATGTTCGCTACTACACTTTTGTAATCGAGCATCGTTAACACTTATGTGAAGCGCTTTGATATGTCCTTATTTATTTAACGTCGACGGTGAATATTGGGCACGGGGCTGCATTTTAAAAGCGTTTGCCCTGAGAAACcatgaagaattttttttttgttaagcgCGCAAAGACTGATCGGCAGTTTGTGTCCTTGCCTTGTTTTCACTCAGTTGATTATTTAGTTATACTGTATTTTGCTTGTGAcggtgcattaaaatgattcgTGTAAAAATCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09437 FEV; ETS oncogene family protein FEV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251839.1 lncRNA upstream 6718 8859473 ~ 8860379 (+) True LOC122352063
TU101758 lncRNA upstream 40051 8826212 ~ 8827046 (+) True G68808
XR_006251751.1 lncRNA upstream 252113 8600724 ~ 8614984 (+) True LOC122351403
TU101678 lncRNA upstream 360954 8502756 ~ 8506143 (+) False igf2bp2a
TU101562 lncRNA upstream 644280 8222587 ~ 8222817 (+) True G68678
TU101845 lncRNA downstream 175827 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA downstream 191487 9063120 ~ 9064676 (+) True G68880
TU101861 lncRNA downstream 286643 9158276 ~ 9160821 (+) True LOC122351827
TU101871 lncRNA downstream 304691 9176324 ~ 9178926 (+) True G68895
TU101872 lncRNA downstream 309118 9180751 ~ 9184568 (+) True G68896
XM_043249421.1 mRNA upstream 792 8863387 ~ 8866305 (+) True cryba2b
XM_043248054.1 mRNA upstream 35195 8827690 ~ 8831902 (+) True umps
XM_043248053.1 mRNA upstream 42706 8801297 ~ 8824391 (+) True itgav
XM_043249543.1 mRNA upstream 69162 8793317 ~ 8797935 (+) True zc3h15
XM_043249719.1 mRNA upstream 164802 8651167 ~ 8702295 (+) True znf804a
XM_043249163.1 mRNA downstream 95228 8966861 ~ 8976999 (+) True chpfa
XM_043249573.1 mRNA downstream 270959 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA downstream 270959 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249171.1 mRNA downstream 284412 9156045 ~ 9159759 (+) False LOC122351827
XM_043249170.1 mRNA downstream 284418 9156051 ~ 9159985 (+) False LOC122351827
TU101764 other upstream 1200 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 433614 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 524418 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2902217 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2981344 5883927 ~ 5885753 (+) True G68097
XR_006251841.1 other downstream 270959 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 270959 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 571492 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1457098 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2611804 11483437 ~ 11489996 (+) False LOC122352020

Expression Profile