RNA id: TU101773


Basic Information

Item Value
RNA id TU101773
length 2540
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G68822
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8761771 ~ 8835225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatgtttttttttttttttttttttttttagctttgtcaaGAAGCACTCGCTTACCCGAACGAGAGCTAATAgtgagtaaaaataataaaatagagtaaaatttctctgtgactctggggcagacagaacagtattacatgacattgagcacactatacacagacagaaaaggaaatgctgtttgctctgtgaaacTTCACAGCGGGGCACAGCGACATTTTGAAGGTCAAGACAGACCGCCACATTTATCTTTGTCTAAGGCAGATAAGATGGGTGGGAAGTGAATGAGAGGCGCTCTCTCTATTCCAAAACAGTGAACTGGATGTGTACACTTACCCCCAGAGCCCAtctgactaaaaaaaaatagtatgaaaTGCTTTAGCTGCTGTTGAGATAGATCCTTTCTCAATGTAGTGCCAGGAAAATTTTGGTCAAAAGGGAAGACAGATGTTAGGGTTAATGACAATCTTTTCATTAGAACTAATGAGCTGTCTGTCACCACTCGCAGTTCCAACCCACAGTCAGGTTTTAGTTTATGTCGATGACGTATTGATTGCCTCAGACACACAAGAGCACAACAaagaagctgctgtaaaagtgtttcagcTAAGCAAGCTGCACAAGGGAAGCTAGAGATATGTGAGATACATAAAGTAACATCATTGGAAACTCCATTAGACATGTCAGTGATACCAGACATGCAAAAGCAAGCACCAGCGTCTGAGAAACAAATGTGGTTAACAAAAGGAGCACAATTGTCAGATGACAcatacagacttgaaggcaaactgtgccttccacgaagtttgtacaaaacagcagcaatcttgacacatgggcaagcacatatgtcaacaggagggatggtgcatagggtagaacagtacttttatgcaccaggttttaataactactaaaaaaaaattttgtgaatcttgtttgatctgctgtaaacataactgcagacctaagagaggtcaatttccaaagccagactaccttttcagtttatccacatggattttattgaactgacaccttgctaacagtacaaatactgtacgttcagtttaccgctgtgtgatgatgtgtgtgagaaaccacaagagcagcatacactagcagagtggatgaacaaaatgttgaaatttaaaatgtttgaaatgttgtgagagcaaatgatctgccagatatacctctgtccccacaggtctcaagagtgaaaccaggcgacagcatcctgatCAAAGTTATCCTGACCACACCGACTGCAGTTAAGATCGCTGAGAGATCTACGTGGATTCATcaaagccattgcaaactgctaacaccttgggaggacgctgagtaagggtggaagtcggccggtatcaaaacctttggctgctgaagaaatcaactaatccCTTACTCCCAGCTATAGCGCCCCCAATGGGAGCACGTGAGGGCTGGAGAGTTGCTCTAaacctgactgcagcagtgacGTCACACTGGTGGCCATATGAGAGACGATCAAAGGGGAACtgaaactaattgaattttgactggttcacagaacaacatgaactaaagactcattttgatttgaacatgtttatgcattatctgtgttttaccatgtttaagggcaatgattactaaaatgattagccagacttttccagttttaccatgcttctccaccaagagagaaacGGAGAGCTTTAAGTATCATgtgtgaagtctcagttaaaaccacagctgtgacatggctgagtgctgatgttatgatacaaaaggtacactgataagctacagtagccgtgctgagaacaagaggcactgttttatttcattcttccttttcagtttattttcacattttcctcctatgttcatgctttaaattttatgttgtatacattatgattaagatgcaagccttacaggtgatcgcccaggTAACATTttgggggtcggttgggaatttttcctcagatactggggttttcgcccaaccttgctgtttaaagtaagcatcgactatGTAATCcagtaatcagtagagatgtagttcaatatgcatatgccttattatgttatttttcaggtgctaaACGTCAAAGAGGAGGGatatgttagggttatgtattgacattttgcaactttgatccttcagttacagcttccatcgggtgccaggctttgtcagcctgatgagaacggaatgttggagttaaatgttgacagttatgcacctgtggccttttagtttcagtttgattcttggtcataacatggcctccgtagaatactgatagggccaccggaagaatctgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttactgtatcttgtcttttcctctataaataaagcgacTTGCAATCTGAGCTTcgggaggaggcaaagcagggaaggaggcagaaggcgggggcctgcccggcccccggcctcaggcggactgtgatccgtctggaggcaaaagggaggttaaggagaaacctgcttctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251831.1 lncRNA downstream 287193 8470863 ~ 8474578 (-) True LOC122352023
TU101355 lncRNA downstream 939882 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 942939 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 1380263 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 1420277 7327829 ~ 7341494 (-) True G68473
TU101819 lncRNA upstream 83316 8918541 ~ 8919746 (-) True G68857
TU101959 lncRNA upstream 402892 9238117 ~ 9238462 (-) True G68948
TU101996 lncRNA upstream 772079 9607304 ~ 9610739 (-) True G68981
TU102008 lncRNA upstream 796808 9632033 ~ 9642612 (-) False G68987
TU102006 lncRNA upstream 798638 9633863 ~ 9652602 (-) True G68987
XM_043248713.1 mRNA downstream 251485 8506932 ~ 8510286 (-) True tmem41aa
XM_043248714.1 mRNA downstream 251488 8506932 ~ 8510283 (-) False tmem41aa
XM_043249061.1 mRNA downstream 405915 8349238 ~ 8355856 (-) False glb1l
XM_043249060.1 mRNA downstream 405915 8349238 ~ 8355856 (-) True glb1l
XM_043249063.1 mRNA downstream 420311 8338994 ~ 8341460 (-) False LOC122351780
XM_043248259.1 mRNA upstream 41456 8876681 ~ 8879088 (-) True cdk5r2b
XM_043248344.1 mRNA upstream 84638 8919863 ~ 8934331 (-) True wnt10a
XM_043248305.1 mRNA upstream 107634 8942859 ~ 8961374 (-) True wnt6b
XM_043249164.1 mRNA upstream 143293 8978518 ~ 9048802 (-) True asic4a
XM_043249577.1 mRNA upstream 314967 9150192 ~ 9155280 (-) False gmppaa
unassigned_transcript_1465 other downstream 420756 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 666924 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 743666 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 1613151 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 2500702 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 1072963 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 1598282 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 1598282 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 1598282 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 1680047 10515272 ~ 10519457 (-) False fdx1

Expression Profile