RNA id: TU101792


Basic Information

Item Value
RNA id TU101792
length 1001
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G68839
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8816520 ~ 8817618 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gactggagtaataatgctaaGAATTTAACTTTGCCATCACGGGAAtagattacatttcaaaatatgttaaaatagaaaatagttattttgaattttaatacaatttctcAATACACTGttatttcctgtatttttattacacaaatgCAGCATAGGTAAGcataagagaagaaaaaaaaaagacagacttTTGGAAAGCAGTGTAGAGGTCTAATTTGGGGAAACAGCTGTACCTGTTTGGTGATGTTTGTAGGTGTAGACTGGTCGAGGATGGGCAACAGGCCACTCTTATCTGCAGCTGCGTTGTAATTCAAGCTGTACtccataaaaacagaaatgggtGTGATCTTATCCCTAAATTCTGAGTCATCCTGttaagagaaaaagagagaatgagagaggaaaagagaaagagagagagagagagagagagagagacaaaagtGTTTGGAGAGAGAAATGGGGCCTCTAGTTGAATGAGCTCAAGCCTGGGGAATTTCAGTACAGCTTACAATCTCTACAACATGCTCTTTTATGTCCAGGAAAGAGCGCTTTGGCTTTCCAGGTCAAATCCTTCTTTAGCTCTGTAACGCATTGTtcctttttgaaaacaaaataacaacatattCCAGTGCCAAACATCTGGGCTATCTGCCACTACAGCTTTAAGCATGGTCAACAGAAGTGAATGAGTTACGCGTGTTCTTGCATCTCAACTGGTAGAGCATTACATCAGAAACACTTAGGTCACCGGTTTGACTTCCTATATCATATATACCTGGCAAAGCACTGcaaattgctttaaataaaaacatttgtcaaaTGAATAAGTGTGAATGGACTCACTATTAAATAAGCCTGAAGCTCCTCGCAGGCTGGTGCTTGGTTGTTGGAGACGGTCATGTTCTTTGAATACTGAGACATCTTGTTATGGAGGAACATCACCCGTTTGATGGCTCCCTTGTGCTTGAGACGGTCCAGGGTCAGATCCACTTGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101782 lncRNA downstream 11115 8802385 ~ 8805405 (-) True G68830
TU101778 lncRNA downstream 14771 8793861 ~ 8801749 (-) True G68826
XR_006251831.1 lncRNA downstream 341942 8470863 ~ 8474578 (-) True LOC122352023
TU101355 lncRNA downstream 994631 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 997688 7815249 ~ 7818832 (-) True G68555
TU101798 lncRNA upstream 4738 8822356 ~ 8824387 (-) True G68844
TU101797 lncRNA upstream 5147 8822765 ~ 8824387 (-) False G68844
TU101819 lncRNA upstream 100923 8918541 ~ 8919746 (-) True G68857
TU101959 lncRNA upstream 420499 9238117 ~ 9238462 (-) True G68948
TU101996 lncRNA upstream 789686 9607304 ~ 9610739 (-) True G68981
XM_043248713.1 mRNA downstream 306234 8506932 ~ 8510286 (-) True tmem41aa
XM_043248714.1 mRNA downstream 306237 8506932 ~ 8510283 (-) False tmem41aa
XM_043249061.1 mRNA downstream 460664 8349238 ~ 8355856 (-) False glb1l
XM_043249060.1 mRNA downstream 460664 8349238 ~ 8355856 (-) True glb1l
XM_043249063.1 mRNA downstream 475060 8338994 ~ 8341460 (-) False LOC122351780
XM_043248055.1 mRNA upstream 7045 8824663 ~ 8827049 (-) True si:dkey-69o16.5
XM_043248259.1 mRNA upstream 59063 8876681 ~ 8879088 (-) True cdk5r2b
XM_043248344.1 mRNA upstream 102245 8919863 ~ 8934331 (-) True wnt10a
XM_043248305.1 mRNA upstream 125241 8942859 ~ 8961374 (-) True wnt6b
XM_043249164.1 mRNA upstream 160900 8978518 ~ 9048802 (-) True asic4a
unassigned_transcript_1465 other downstream 475505 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 721673 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 798415 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 1667900 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 2555451 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 1090570 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 1615889 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 1615889 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 1615889 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 1697654 10515272 ~ 10519457 (-) False fdx1

Expression Profile