RNA id: TU101846


Basic Information

Item Value
RNA id TU101846
length 1453
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G68880
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9063120 ~ 9064676 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attgttggtaccctttggtcaatgaaagaaaaactcacaatggtcacagaaataactttaatctgacaaaagtaataataaataaaattctataaatgttaaccaatgaaagtcagacattgtttttcaaccatgcttcaacagaattattaaaaaaaaataaactcatgaaacagacctggacaaaaatgatggtacccctaacttaatattttgttgcgcaaccttttgaggcaatcactgcaatcaaacgcttcctgtaactgtcaatgagacttctgcacctctcagcaggtattttggcccactcctcatgagcaaactgctccagttgtgtccggtttgaagggtgccttttccagactgcatgtttcagctccttccaaagatgctcaataggattgaggtcagggctcatagaaggccactttacaatagtccaattttttcctcttagccattcttgggtgtttttagcggtgtgttttgggtcattgtcctgttgcaagacccatgacctgcgactgagaccaagctttctgacactggctagtacatttctctctagaattccttgatagtcttgagatttcattgtaccctgcacagattcaagacaccctgtgccagacgcagcaaagcagccccagaacataacagagcctcctccatgtttcacagacattctcccagaagctttgtggcttgtcaacatgtagtttggcatattccagtcttgctttttttatgattcgttttcaacaatggtgtcctccttggtcgtctcccatgtagtccactttggctcaaacaacgacggatggtgcgatctgacactgatgttccttgagcatgaagttcaccttgaatctctttagaagtctttctaggctcttttgttaccattcggattatccgtctcttagatttgtcatcaattttcctcctgcggccacgtccagggaggttggctacagtcccatggatcttaaacttctgaataatatgtgcaactgtagtcacaggaacatctagttgcttggagatggtcttatagcctttacctttaacatgcttgtctataattttctttctgatctcttgagacaactctttcctttgcttcctctggtccatgtcgagtgtggtacacaccatatcaccaaacaacacagtgattacctggagccatatatatataggcccaatggctgattacaaggttgtagacacctgtgatgctaattagtggacacaccttgaattaacatgtccctttggtcacattattttcagtgttttctaggggtaccatcatttttgtccatgcctgtttcgtgagtttatttttttaaataattctgttgaagcatggttgaaaaacaatgtctgactttcattggttaacatttatagaatttttatttattattacttttgtcagataacagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101765 lncRNA upstream 194843 8867139 ~ 8868277 (+) False fev
XR_006251839.1 lncRNA upstream 202741 8859473 ~ 8860379 (+) True LOC122352063
TU101758 lncRNA upstream 236074 8826212 ~ 8827046 (+) True G68808
XR_006251751.1 lncRNA upstream 448136 8600724 ~ 8614984 (+) True LOC122351403
TU101678 lncRNA upstream 556977 8502756 ~ 8506143 (+) False igf2bp2a
TU101861 lncRNA downstream 93600 9158276 ~ 9160821 (+) True LOC122351827
TU101871 lncRNA downstream 111648 9176324 ~ 9178926 (+) True G68895
TU101872 lncRNA downstream 116075 9180751 ~ 9184568 (+) True G68896
TU101875 lncRNA downstream 116228 9180904 ~ 9194303 (+) True G68897
TU101878 lncRNA downstream 176262 9240938 ~ 9241387 (+) True G68900
XM_043249163.1 mRNA upstream 86121 8966861 ~ 8976999 (+) True chpfa
XM_043248266.1 mRNA upstream 191487 8867097 ~ 8871633 (+) True fev
XM_043249421.1 mRNA upstream 196815 8863387 ~ 8866305 (+) True cryba2b
XM_043248054.1 mRNA upstream 231218 8827690 ~ 8831902 (+) True umps
XM_043248053.1 mRNA upstream 238729 8801297 ~ 8824391 (+) True itgav
XM_043249573.1 mRNA downstream 77916 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA downstream 77916 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249171.1 mRNA downstream 91369 9156045 ~ 9159759 (+) False LOC122351827
XM_043249170.1 mRNA downstream 91375 9156051 ~ 9159985 (+) False LOC122351827
XM_043249639.1 mRNA downstream 378449 9443125 ~ 9566997 (+) True thsd7ba
TU101764 other upstream 197223 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 629637 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 720441 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 3098240 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 3177367 5883927 ~ 5885753 (+) True G68097
XR_006251841.1 other downstream 77916 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 77916 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 378449 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1264055 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2418761 11483437 ~ 11489996 (+) False LOC122352020

Expression Profile