RNA id: XM_043249171.1


Basic Information

Item Value
RNA id XM_043249171.1
length 1143
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC122351827
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9156045 ~ 9160821 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTCCAGTGAGGACAGAACCTGGAAACCGGAGACGGCGCGAGACCTCAGCGGTGTTGCCTGGCTCCCGCCAATCAGAGCGCTCCAGTGCGGACCTCGCGCTCTTCGCTTCATCACGAGCCGCGCTATTCAGGCGGAGCGGAGCAAGTTCGTTCTGCGCGCTCTCGTTTCATTCAGTCCCTTTGCTGAGGACGCGGCAAACGTGGGACATCACAATGTCAAAGGCAGATCCCCCTCCAAGTTACGAAGAGTCaagacagcagcagcagcagcagcatggaAGCTATCCATACCCTCCCTACGGATATCCAGCCCAGCCAGGGGTGTACACGGGCCCCGGGCAGCCTGGCACACATCCCCAGGCGGGCCATTGGCAGGGCCCTGGATACTGCCCTTCAGCAATGCCATCTATGATGCCTTCTTTCGTAACACCAGGGATATTTCCCTCAAACCTAATTGCAGGAGATGCAGAGGACATGTCTTCGACTGGCATATGGGACAGCATGAGTGTCCGACATGCCTTCATTAGAAAGGTTTACCTTATTTTAGCCGTGCAGCTGTTAATCACTACTTCAATCATTGCAGTGTTTGCGTTTGTTGAACCCGTGCGTCTTTTCGTGGTCCAGAATCCTGCCATTTATTGGGCATCATTcccgGTGTATCTTGTTACTTACCTCATGCTGGTTTGCTGCGAGGGGCCGAGgaggCGTCATCCGTGGAATTTAATActccttttcatttttACGCTCACGTTGTCTTACATGACAGGAACAATATCAAGttatttcGACACCAAAGCAGTGTTCCTGGCCCTGGGGATCACGGCAATAGTGTGTATAATCGTCACAATCTTCTGTTTTCAGACCAAGGTCGACTTCACCTCCTGCACAGGCCTGCTCTGCGCTCTTTGCGTGGTTCTTTTGGTGACTGGCATTATCACGTCCGTCGTACTCTCTTTCCAGTGCCGTGGCTGCATATGCTGTATGCCGCTTGTGGAGCAATAGTCTTTACTTTGTTTTTGGCTTACCACACTCAGCTGCTGATTGGAAACCGAGCGAACAGCATCAGCCCTGAGGAATACGTCTTCGGGGCTCTTTCGCTCTATGTTGATATCGTCCAGatcttcatcttcctcctgCACAT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101845 lncRNA upstream 77508 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA upstream 91369 9063120 ~ 9064676 (+) True G68880
TU101765 lncRNA upstream 287768 8867139 ~ 8868277 (+) False fev
XR_006251839.1 lncRNA upstream 295666 8859473 ~ 8860379 (+) True LOC122352063
TU101758 lncRNA upstream 328999 8826212 ~ 8827046 (+) True G68808
TU101871 lncRNA downstream 16565 9176324 ~ 9178926 (+) True G68895
TU101872 lncRNA downstream 20992 9180751 ~ 9184568 (+) True G68896
TU101875 lncRNA downstream 21145 9180904 ~ 9194303 (+) True G68897
TU101878 lncRNA downstream 81179 9240938 ~ 9241387 (+) True G68900
TU101881 lncRNA downstream 95573 9255332 ~ 9412735 (+) True G68901
XM_043249573.1 mRNA upstream 5952 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA upstream 5952 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249163.1 mRNA upstream 179046 8966861 ~ 8976999 (+) True chpfa
XM_043248266.1 mRNA upstream 284412 8867097 ~ 8871633 (+) True fev
XM_043249421.1 mRNA upstream 289740 8863387 ~ 8866305 (+) True cryba2b
XM_043249639.1 mRNA downstream 283366 9443125 ~ 9566997 (+) True thsd7ba
XM_043249642.1 mRNA downstream 283366 9443125 ~ 9566997 (+) False thsd7ba
XM_043249641.1 mRNA downstream 283366 9443125 ~ 9566997 (+) False thsd7ba
XM_043249644.1 mRNA downstream 283366 9443125 ~ 9566997 (+) False thsd7ba
XM_043249643.1 mRNA downstream 283366 9443125 ~ 9564234 (+) False thsd7ba
XR_006251841.1 other upstream 6379 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 6384 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 290148 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 722562 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 813366 8341298 ~ 8342679 (+) False si:ch211-167j6.3
XR_006251853.1 other downstream 283366 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1168972 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2323678 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2886740 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3467776 12627535 ~ 12629535 (+) True G69670

Expression Profile