RNA id: TU101878


Basic Information

Item Value
RNA id TU101878
length 450
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G68900
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9240938 ~ 9241387 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggtgaaccttcaagcgctgcccctggaggaggcagacccagccctgacgttgcttgtcccgtccgagcactaagatgctacgttgaccggacacaaagcttcaggacctcagtccagctctcgtttgtcacagaggccggcagaaggggagtgccgcctccaagcagaggatggctcactggatagtggacgccattaccctagcctaccaagcacagggtatgccctgccccccccctcaggttgcgggcacactcagcaagtgttgcatcgtcctgggcggtggctcgtggcacctcgctgacagattgtagagctgcgggctgggcgacccccaacacgattgctagattctatagcctacgtgtggaaccggtatcctcctgtgttctcacctcaaacgggtagaaACACTGAGAGGCCCGTTttggtcggcttgttaaccgctcc

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101875 lncRNA upstream 46635 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 56370 9180751 ~ 9184568 (+) True G68896
TU101871 lncRNA upstream 62012 9176324 ~ 9178926 (+) True G68895
TU101861 lncRNA upstream 80117 9158276 ~ 9160821 (+) True LOC122351827
TU101845 lncRNA upstream 162401 9047460 ~ 9078537 (+) True G68879
TU101881 lncRNA downstream 13945 9255332 ~ 9412735 (+) True G68901
TU101892 lncRNA downstream 334034 9575421 ~ 9575654 (+) True G68908
TU102047 lncRNA downstream 649264 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 814109 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 819671 10061058 ~ 10061611 (+) True G69031
XM_043249170.1 mRNA upstream 80953 9156051 ~ 9159985 (+) False LOC122351827
XM_043249171.1 mRNA upstream 81179 9156045 ~ 9159759 (+) False LOC122351827
XM_043249573.1 mRNA upstream 90845 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA upstream 90845 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249163.1 mRNA upstream 263939 8966861 ~ 8976999 (+) True chpfa
XM_043249639.1 mRNA downstream 201738 9443125 ~ 9566997 (+) True thsd7ba
XM_043249642.1 mRNA downstream 201738 9443125 ~ 9566997 (+) False thsd7ba
XM_043249641.1 mRNA downstream 201738 9443125 ~ 9566997 (+) False thsd7ba
XM_043249644.1 mRNA downstream 201738 9443125 ~ 9566997 (+) False thsd7ba
XM_043249643.1 mRNA downstream 201738 9443125 ~ 9564234 (+) False thsd7ba
XR_006251841.1 other upstream 91272 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 91277 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 375041 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 807455 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 898259 8341298 ~ 8342679 (+) False si:ch211-167j6.3
XR_006251853.1 other downstream 201738 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1087344 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2242050 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2805112 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3386148 12627535 ~ 12629535 (+) True G69670

Expression Profile