RNA id: TU101881


Basic Information

Item Value
RNA id TU101881
length 630
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G68901
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9255332 ~ 9412735 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGGAGTGAGAGGGACCACCTCCGCAAGCTCAAGCACCCTCAGTGAAAAGAGCGCAATGAGCTGTGTGCTGTCACATCGGCAGTTGctatctcctctctctctcgttctcccGCTCCCGCTCGCTTTCGCAGGCTGTCAGCTGGAAGCATCAGCGTAGCCCTGCTGGCTTCTGGACACTTCCTGGGAGGAATCTCCAGCAGTGGATACTTCATCCGGCAATCGCCAAAGGGTTATCTATTCTCACGGTCGGTGATGGTGTGACAGACACATCTTTCACGCTCTGATCTTCCCGAGGGGGAGCCACTAAGGATTAGCTGGCAGATGATGCATCAGGGGGAGGAGGAAAGGCCGTGTTTATCTGCTGTCCCTGTGTCACAGAGAGCTTCTGAGGAGCATTCAGCTGCCAGAGGCATCAGCGGGCCTCAGCCATCCAGCTGTTCACCTCACTGCCACAGCTAAAGTGATGAGTCCCAGCCTTCCCTTTCAGgacTAAAAGTGGACAGGACGTCAATGGGCTGGACTATGATTCTAAAAGATGACTCGGGTGTAACGGGCTGGACATGGCGCGTTGGGAACTACCTGCTGCTGTCTATGTCTCTAATTGGAATGCAAGTGAGGTCGGACCTG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101878 lncRNA upstream 13945 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 61029 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 70764 9180751 ~ 9184568 (+) True G68896
TU101871 lncRNA upstream 76406 9176324 ~ 9178926 (+) True G68895
TU101861 lncRNA upstream 94511 9158276 ~ 9160821 (+) True LOC122351827
TU101892 lncRNA downstream 162686 9575421 ~ 9575654 (+) True G68908
TU102047 lncRNA downstream 477916 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 642761 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 648323 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 648950 10061685 ~ 10061887 (+) True G69032
XM_043249170.1 mRNA upstream 95347 9156051 ~ 9159985 (+) False LOC122351827
XM_043249171.1 mRNA upstream 95573 9156045 ~ 9159759 (+) False LOC122351827
XM_043249573.1 mRNA upstream 105239 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA upstream 105239 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249163.1 mRNA upstream 278333 8966861 ~ 8976999 (+) True chpfa
XM_043249639.1 mRNA downstream 30390 9443125 ~ 9566997 (+) True thsd7ba
XM_043249642.1 mRNA downstream 30390 9443125 ~ 9566997 (+) False thsd7ba
XM_043249641.1 mRNA downstream 30390 9443125 ~ 9566997 (+) False thsd7ba
XM_043249644.1 mRNA downstream 30390 9443125 ~ 9566997 (+) False thsd7ba
XM_043249643.1 mRNA downstream 30390 9443125 ~ 9564234 (+) False thsd7ba
XR_006251841.1 other upstream 105666 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 105671 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 389435 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 821849 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 912653 8341298 ~ 8342679 (+) False si:ch211-167j6.3
XR_006251853.1 other downstream 30390 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 915996 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2070702 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2633764 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3214800 12627535 ~ 12629535 (+) True G69670

Expression Profile