RNA id: TU102048


Basic Information

Item Value
RNA id TU102048
length 946
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G69004
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9890651 ~ 9891596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAaaccaagataaaaaaaaatgaacctattagtaaagaaattaaaatgataaactgTACAAGCAAAACTGAAATACGTGCATGTAAAACCGAATACATTTATGAGACAAGAACAGATGATTTTTCCTCGGAAATTGGtggaaatataatatttgcatacagCGTGTTGCTGGCGAATAATACACAGTATCTGTGAAAATGGATGTGCGTGACTCAGAGCATGATTTgatattgtaataaaacaagAAGCATCAACACTGACAACATAAAAGCTCCTGTGCTCAAAGTACGCTCTCCTCCGAAGCAGCACCCTGCAAACGTGTAGGCCTGCGGTTTCGAGAGAAATCCATACAGGACTTTGATTAATGCAGCAGCTATGAGCTTTAGTCCTGCATTCCCCCAGCTGAGACAAGTAATCAGTGTTCTTGTTCTGCCTGCACAgagacacaaagaaagagactACAGAGGGAAGGGGGCGTTCGCGGAGGCCCAGTATACATAAGCGTGATGTTTCccttgtttgtttgattatgtGGTTTGATAATGCCAACTATTAGGCTTCCCAGGGGGCCTCAGAGAAAGTGATTGAAAACGGGAGGTTGCTCAGAGGGGGTTTACTGACTTACTGCAGCAGCGGAGCACTTAACACTTCACTGCCTCTGCTGCTACTGAGGTTCGTAACCTTGCCGTTTTTTGGAGAGCACTTCTCTAGATTGCTTCTGTGACGTTGCGGTAGTTGAGAGGGGTGTCGTGTGTTCTCAGAAAGCTCAAATTAAATTCATCGTGGGTTTAGTCAGACCTCTTTATGGTTTCAAACATTTCAACCTATAAGACAATGCTTTGAAAACTTAAAGAAGTTGTACATAGATCAGCTGTTAGCTGTCAATTCGTCActattgcctttttttaattgactgaaCAGTGATggtattattgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102035 lncRNA downstream 217750 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 236084 9654116 ~ 9654567 (-) True G68988
TU102006 lncRNA downstream 238049 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA downstream 238049 9637967 ~ 9652602 (-) False G68987
TU102008 lncRNA downstream 248039 9632033 ~ 9642612 (-) False G68987
TU102062 lncRNA upstream 21490 9913086 ~ 9945802 (-) True G69018
TU102268 lncRNA upstream 193837 10085433 ~ 10087022 (-) True G69147
TU102250 lncRNA upstream 217379 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 226197 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 245053 10136649 ~ 10138759 (-) True G69168
XM_043249536.1 mRNA downstream 87059 9677254 ~ 9803592 (-) True igsf3
XM_043249502.1 mRNA downstream 221129 9658403 ~ 9669522 (-) False ttf2
XM_043249501.1 mRNA downstream 221129 9658403 ~ 9669522 (-) True ttf2
XM_043249503.1 mRNA downstream 221355 9658403 ~ 9669296 (-) False ttf2
XM_043248972.1 mRNA downstream 264484 9611019 ~ 9626167 (-) False nxph2a
XM_043248562.1 mRNA upstream 16595 9908191 ~ 9910108 (-) False LOC122351483
XM_043248247.1 mRNA upstream 98594 9990190 ~ 9993472 (-) True LOC122351281
XM_043248468.1 mRNA upstream 160029 10051625 ~ 10057760 (-) True acp6
XM_043248260.1 mRNA upstream 168722 10060318 ~ 10070885 (-) True gja5a
XM_043249100.1 mRNA upstream 200754 10092350 ~ 10096244 (-) False LOC122351801
unassigned_transcript_1465 other downstream 1549636 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1795804 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1872546 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2742031 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 3629582 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 16592 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 541911 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 541911 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 541911 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 623676 10515272 ~ 10519457 (-) False fdx1