RNA id: TU102062


Basic Information

Item Value
RNA id TU102062
length 539
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G69018
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9913086 ~ 9945802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGCTGCTCGCGCTGGGAACTGGAGAGCGGCACGAGAGAGCTCAGATCCATCCCAGCGTTCAACTCGCTGTACCGGATTCATTCGCGAACGGCGGATGTAATTTATCGAAGGAAACCCCGAAAAGGCTTTAATCAATCGCACAAGCGTCTCTCGGCGAACGCGGCCGTTGCTCGGGGCTGGATATCCGTGTTTTAGCCGCGCAAGACGCGTTTGACTCGGGAGAGATTGAATCGCCGTGGAGTCGGTATACGCACTTTCGCGCGGTCCGAACAGGTGCACGCGTTCATAACTCCATCCCGACTCATTTCTGAAGGTCTGAGTGGCGATTAGGAATTTATAACCACATTTGCATTTCCCCTGCAATTTCTGGACTTAATCGGCAGTGCTGAAAGAGGAGAACTATGGATATCAAATGGCTTATTATAGCCTTTGCTGTTTTGGTGGTCTCATGCCCGGCTCAGCGGCAGGTCACAGTTCAGCCAGGGGCCCTTGATCCGAACAGAAGGCTCTCACATCACCATCTGGTGTAACGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102048 lncRNA downstream 21490 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 240185 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 258519 9654116 ~ 9654567 (-) True G68988
TU102006 lncRNA downstream 260484 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA downstream 260484 9637967 ~ 9652602 (-) False G68987
TU102268 lncRNA upstream 139631 10085433 ~ 10087022 (-) True G69147
TU102250 lncRNA upstream 163173 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 171991 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 190847 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 225967 10171769 ~ 10174858 (-) True G69157
XM_043248562.1 mRNA downstream 2978 9908191 ~ 9910108 (-) False LOC122351483
XM_043249536.1 mRNA downstream 109494 9677254 ~ 9803592 (-) True igsf3
XM_043249502.1 mRNA downstream 243564 9658403 ~ 9669522 (-) False ttf2
XM_043249501.1 mRNA downstream 243564 9658403 ~ 9669522 (-) True ttf2
XM_043249503.1 mRNA downstream 243790 9658403 ~ 9669296 (-) False ttf2
XM_043248247.1 mRNA upstream 44388 9990190 ~ 9993472 (-) True LOC122351281
XM_043248468.1 mRNA upstream 105823 10051625 ~ 10057760 (-) True acp6
XM_043248260.1 mRNA upstream 114516 10060318 ~ 10070885 (-) True gja5a
XM_043249100.1 mRNA upstream 146548 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA upstream 146548 10092350 ~ 10096243 (-) True LOC122351801
TU102057 other downstream 2908 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1572071 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1818239 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1894981 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2764466 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 487705 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 487705 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 487705 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 569470 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 734356 10680158 ~ 10686627 (-) False mrasa

Expression Profile