RNA id: TU102102


Basic Information

Item Value
RNA id TU102102
length 3878
lncRNA type sense_over
GC content 0.35
exon number 2
gene id piga
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10092350 ~ 10113356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCAATTAAGTAGAGTTTAATTGCAACAAAAACAGCAGTCAAAAAGCACACATACTTTAGTTATTTTAAGGAtgaacaaaaattattaaacagaaaaggCTGAAACACAATTaggcagaacagaaacaggtGGGCAGACATGGGTGGAAACTCATTggtaaacaaaataagaaaaaacaggaacataggagaaaatgaaaccaaaaccaacaaaaactgTAACACAAATACAGAAGTTTTCCATTTGAGATATATGTCCCAGATTGGCAGTtttctgtgcatttatattcaattaTGATTTATATGTGTAATTTACTTTAGTGTCATTTGGAATAGATTTTTATGCAATTTGGgtaattttttatgttcaaTCCTTgtacaatgtaataaaattgcaaataatttaCAGCATGTAATTTTTGACaggtaattttacatttatcagtaatttattaataactttTGTAATCTATTTTACTAGATTCAACTGCCaagcaaagtaaaataaatgctcGCCATAGGAAGCACGTTAATTCTGACCCTGCGGTCAAGCTCAATCGCCAGATGTAATTTTCTAATGTAAGGataattttttatgatttcatttaaGAACCTGAACCAGCAACCATATGCTACTCTAATTATAGATAGCTATTTACAATCAGATGTTGATTTGGCAGCCCCAGAGCCACCTCACTGGCATATGACACAGGTGCATTTTCTACTTAACactctttaaaataagaaaaaaatactgcgCCATTGACTTTTGACCAGGTTTGAGTTGGTCTGTGGCGCAGTCTATTTTAAGTTTCTCAAAATAGAAATGTGCCATCAATACGCCTGAacgcaacttttttttttagaccagcACACCCACAAATGGTCTCAGATACATTTGCTAGTTAAATTACGTGGCCGATCTGGACTGGAAAATGAGAACTGCCTCGGAGTGAAACGAGCACACATGCTTGCACTGCGTCTTGCATCAGAGCCCTTAGAGGgcccatatttttttttattttttgtggtttatatttagaaatgtatttaatgatgAAATAACCAATGCTGTGTCTGTCTCAACAGTGCCAAACATTGGGTAAATCTTTTCTGTCCCACTAAATTCTGTCTTAAAGGTGTAGATATGTTGTCTTTTCTGTACATCATAGAAGGATACATGGCCCTCTTCTATGTCAAGATAAACTCCTATTTTACATGGTTTCAGCATATTGAGTTTAGTGACGGGTTCAGTCAAAGCTATTAAAGTTCCCAGCTGCAGACGCAGATTCCAGTATCCTGCTTTTGTATTCATTGTGACATACCCATGCCGAGGGGCAGATTCCTTCACCACTCCCACACGCCACTCACATTTGCCCTTTACATCGACCTCCCAGTAATGTCTACCTGCATTATAACCCTCCTTAGCTTGGACACAAGTCCAACCATCAAATTTACATCGCTCTCTTTGAAACCCTCTCCAGTAATCCAgacctgtgtgtttttttgctattaaataTTTCCCATCTTCAGAGACTTGGAGGTCCGGGttggctgtgtttggatccagaaTGACATCAGCTtgagaaacagaagaaagaaagttgaATAATAGTGCTAGAAAACCTTTAACCTGTATAGAAAATtcatattgttttacatttattatgaaaaaaaaactgttatatcAGATTAGTTGTaccttttaattttgtaatcCAATTCCAAACTGCAAAAATGAAAGTAACAGTGACAAAAAGAACCTAACAAGAAGTTTATGCCAAATTTTATAGAgtgattaaataatttaaactatggttttataaaatatctgaCAGTACCTGCGTTAGGAATGTGCAGTCCAGCTACAGACAAGACCGGAAAGACCAGAAAACTTTGTAAAGTTTTGCAAGTAATACAAAATTTATATGTAAGTCAAGTTTCTTAAGGTAGTTCATATTTTGCTCAAAAATCCTATTGCAATAAAAACTCACCTGAATTTTTTGAGCCCTGTTTATTCTTCACCCACTGTTTAGGAGCTGAATTCTTCAAttcaaaagagaaatattttattgggacaacttaaataaatagtttctaaagtttctatatttaatatattggtTTAAAAGACAATGGACCACCGTCTCAATTATATAGCCAGTTTGAtcagtttttttacataattcacCTCAGAGCTTTTTGACTGCAGCACAGTCCACATCATCCAGTCCATTACTGGAAGTATGCTGGATTCTCGCTTTTTCCACTGTCCGTGAAGATCCCTCAGAGTTTCTTCACATTCACCCTCCAGACATACTGAATTCTagacaaaaacatgtttacgaGATTCCTTTTTTAGATACGCCATGTCTGAGACAGTATGTCTTCATCTGATCTCTTTACAGTacctgtttcattttttttagcttccAAGACCAGttgcacaacatttttttggctCTCTTTACTTTCATTTCTCTGTCCCAAACATTCTCTGAAAAGGTTTGTGGTGTCTGTTGTAAGAAGAAAAACATAAGCAAAAACTGAGAGTAGCATAAAGGGCCAAAAGTCCAAGAGCGAAtgagctgtttttatttattaacttaaactTGTTACAACAAATTTAGTACAAATTTAAAACCAATATAAGAAAAACCATCTAGAATCAGTTTGAAAAGGTAGATCTATGGGAAAATGGTGACCTACAAGAAAAATGGTATGTATTTGTATTGGTATGTATTATGGTTCAAAAGTAATTAGCAGAAATATGAGTACAAATGTAGGCTGTTGGTGATAGAGATACTAGAGACAATTGGGAAAATGAAAGTTTGCAtttcacagtttaaaaaaaccaCACCAACCTGTTCTTCCtctatttcttttgtttgcaaGTGCTCAAGCTCTTCtgcccactgcaaaaaataatactGCTGTTCCTCCTTGGATCCTTTATTTCTCAACTTCCCTGACATCAAGCGGcatttctttctctgttggtGCAGTTCACAGGTTTTGgttaatcttctttttttttaattctcttaaACTCTAAACTCATACAGTTAAACTTGTAATAATGTCTCACATCTACCTGTATCACTCTGTCCAGTTCAGCAGCCAGCTCTCTGATGAGTTGCTTTGACTCATCAACAGTTAAGGTGTCTTTCTGCTCAGTACTTTTGCGGGTACGttttttaaaactctgtatacattttacattcatatttagtGCATGGTGATTCAATTTCATTCATGATACtccacatatattatatataggaTTCATGCTTTTACCTTTAGACAGGCTTTCCCAAATGTTATGAATATTTCCACAGAGTCCtgtgagaaaaaaacagaattccaaaaaaaaaataatttaatttccttaAAAACATGCCCTGAAACTAGCAAGAATATctgtctttttaatatttagctaTTTATGTATAAGCTATTAATAGTATTTTCCTAAATACCTGCTGTTGCTCGTCCCTTAGATCTGGCTTCACAAATGGGTAAGAATTTGTAAATCTCACTTTCTTTACGTGTGGCCCCGGGAGACTGCCTGCACTGAAGGCAATGGTTTGTTCTGCAAATATAGTCAGAGTCTCTCTGAATTTAACTACACAACATACAAAAACtgacagtttaaaatatttgccaCACTACCACAAATCTCTTATACAAAGAATATTTAGCTCTATGATAAAGacataaaagttaaataaaaaaaaaacataccagcTGCAACTGCCATATTCGTTGTAAACAACAGTCCAGTACCAGCGCTTGTAGCGCTTCTGAGAGAAGAAAAGGAAACGGTCGGTTTACACGAATGAAATGAAAGCAGGAAGTGTTGGGTGTGTAACGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102097 lncRNA upstream 21459 10070658 ~ 10070891 (+) True G69034
TU102096 lncRNA upstream 29914 10062208 ~ 10062436 (+) True G69033
TU102095 lncRNA upstream 30463 10061685 ~ 10061887 (+) True G69032
TU102094 lncRNA upstream 30739 10061058 ~ 10061611 (+) True G69031
TU102091 lncRNA upstream 35849 10055496 ~ 10056501 (+) True G69028
TU102110 lncRNA downstream 6123 10107840 ~ 10108184 (+) True G69042
TU102130 lncRNA downstream 71566 10173283 ~ 10174783 (+) False si:dkey-100n23.5
XR_006251805.1 lncRNA downstream 73331 10175048 ~ 10179380 (+) True LOC122351843
TU102183 lncRNA downstream 318765 10420482 ~ 10420692 (+) True G69089
TU102184 lncRNA downstream 320326 10422043 ~ 10422253 (+) True G69090
XM_043248209.1 mRNA upstream 5389 10082276 ~ 10086961 (+) True gja8a
XM_043248467.1 mRNA upstream 40816 10042165 ~ 10051534 (+) True si:dkey-229b18.3
XM_043248133.1 mRNA upstream 53988 10030801 ~ 10038362 (+) False chaf1b
XM_043248132.1 mRNA upstream 53988 10030805 ~ 10038362 (+) True chaf1b
XM_043248131.1 mRNA upstream 61798 10022693 ~ 10030552 (+) True LOC122351209
XM_043249108.1 mRNA downstream 7228 10108945 ~ 10113356 (+) False piga
XM_043249106.1 mRNA downstream 7229 10108946 ~ 10113355 (+) False piga
XM_043249110.1 mRNA downstream 12277 10113994 ~ 10117548 (+) True asb11
XM_043249096.1 mRNA downstream 16144 10117861 ~ 10139245 (+) False sytl5
XM_043249098.1 mRNA downstream 16144 10117861 ~ 10139245 (+) False sytl5
XR_006251853.1 other upstream 535703 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 942684 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 942689 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1226453 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1658867 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 227014 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1381720 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1944782 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2525818 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2629119 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile