RNA id: TU102110



Basic Information


Item Value
RNA id TU102110
length 345
lncRNA type intronic
GC content 0.45
exon number 1
gene id G69042
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10107840 ~ 10108184 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGAAAGTCAACAGTTGCAGTGTTATTAGACCATATGGGATGATCACATCAGAGCTCAATTAACGTTTggcaagccagcagagggagctttTACCTCCGCCTGGACtactacttcctgtttgtggactataTATTCTGAAGCAAGCCTTTCCCTGGCATGTAGCGtccttgtttgttttgtggataTTCTCTGGACTTTACTCTGCCTGACTTGTTTCTgggttttgttgttgctttgcctctgatattcctgtttgctgtgttttgatgtCTGCCTGCTCTGACCATGGCCTTTGGTAAATAAAAGCCTGGGAATGGATCCGCCGCCTCTGACTCCTCATTCATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102102 lncRNA upstream 6123 10092350 ~ 10101717 (+) True piga
TU102106 lncRNA upstream 6123 10092350 ~ 10101717 (+) False piga
TU102101 lncRNA upstream 8355 10092350 ~ 10099485 (+) False piga
TU102105 lncRNA upstream 8452 10092350 ~ 10099388 (+) False piga
TU102103 lncRNA upstream 8452 10097819 ~ 10099388 (+) False piga
TU102130 lncRNA downstream 65099 10173283 ~ 10174783 (+) False si:dkey-100n23.5
XR_006251805.1 lncRNA downstream 66864 10175048 ~ 10179380 (+) True LOC122351843
TU102183 lncRNA downstream 312298 10420482 ~ 10420692 (+) True G69089
TU102184 lncRNA downstream 313859 10422043 ~ 10422253 (+) True G69090
XR_006251822.1 lncRNA downstream 315030 10423214 ~ 10435142 (+) False LOC122351945
XM_043248209.1 mRNA upstream 20879 10082276 ~ 10086961 (+) True gja8a
XM_043248467.1 mRNA upstream 56306 10042165 ~ 10051534 (+) True si:dkey-229b18.3
XM_043248133.1 mRNA upstream 69478 10030801 ~ 10038362 (+) False chaf1b
XM_043248132.1 mRNA upstream 69478 10030805 ~ 10038362 (+) True chaf1b
XM_043248131.1 mRNA upstream 77288 10022693 ~ 10030552 (+) True LOC122351209
XM_043249108.1 mRNA downstream 761 10108945 ~ 10113356 (+) False piga
XM_043249106.1 mRNA downstream 762 10108946 ~ 10113355 (+) False piga
XM_043249110.1 mRNA downstream 5810 10113994 ~ 10117548 (+) True asb11
XM_043249096.1 mRNA downstream 9677 10117861 ~ 10139245 (+) False sytl5
XM_043249098.1 mRNA downstream 9677 10117861 ~ 10139245 (+) False sytl5
XR_006251853.1 other upstream 551193 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 958174 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 958179 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1241943 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1674357 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 220547 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1375253 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1938315 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2519351 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2622652 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile