RNA id: XM_043249272.1


Basic Information

Item Value
RNA id XM_043249272.1
length 3274
RNA type mRNA
GC content 0.40
exon number 15
gene id si:dkey-100n23.5
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10167336 ~ 10174783 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTCCCTCTGCGCACTCCTTACGTGTCAATGTGGCTGTGGCGTCTCATGATGTGCGCGCTCCACATCAAAATATTAGttagtaaaaagaaagaataattatGGGAGATGAGCATCCACTCCAGGTTAACAACGACAGCAGCTCCCGCTGTGCTTTCCTCAACGCCGTGCCCGACGACTATCGATGTGATGTGATTCTTAAAGTGAAAAGAGCCACAGGGACATTTTCTCTAGTGGCATGCTTTTTCATGATGTTTGCGATGTGGCTGCTCCGCCGATGTAACTCTTTGGCACAGAAAATGATATTCAGTCTGACAGTAGCTGCAGCTTTTGACAGTGTTGCGTATATTATGGGAGAGTCTCATCTAGAGGGATCTCTGTGTAATTTTCAGGCCTGGTGGCTCACGTATTTTGACTGGACTGCACTGATGTGGGTTTGTCTTATTACGTTTAATCTGTACCTGAACCTGGTGAGAGAAATCAGAACTGAACATTATGAGATACCATATCATTTGGTGGCTTGGGGTATTCCTCTGCTCATGTCCACCCTCCCCCTGATGGCTGGTTACTATGGTCCTGCTGGAGCCTGGTGTTGGATCACAGATAATCACGTTGGGTGGAGGTTTGGCATaTGGTATGTTCCTCTGTTTAGCCTGATTATCCTCATGACCTGCTGTTATGCTCGAATCATCTGTGTGGCCAACGAGaggatgcGTTCCTGGTTAGGCACCTTTAAtccagaaagagagaggaggaagATCTCTCTAGCTGAAGAGATCAGACCGTTGAAGTGGTATCCCTCTGTCTATCTGCTCGTCTCTATATTTCCTCTCATAAATCGACTTCATAATGCTGCTTACCCAAAGAACCCTGTGTTTTCGCTGACGTTACTGCACGTGCTCAGTGCACCCTTGCATGGGCTTGCAAATGCTCTCGTCTTCGGTAAGGACACCTGGAGTCAGCTGAGTACAACAGGAATAAAGGTTGCTATTCAGTCTCGACTGTGTGCCAGCACAAGAATTAGAGAGTACCACGCTGCAAATGTAAGATACACACATGACCTTGATACACACTCCGATTCTGACGATGAAGACAACAACATTCTATTTTACAGCCCAGACATGACCTTAAAAGATAGGGGACCCTGGGAGAATGtttagaaagtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtgcacatttttacattctttgCCTTTTAAAGAATTTCTATCAGTGTTTCCGTGTTGCAGCTTTCGTGTTGACACTTTAATTAtagcaattattattatgcacCTTTTTCctcaaagaggaaaaaaagccTATGGGTGAGGAATGTGGTTTGTTAGACGGCATAGGTACATAACGTGGAAAATAACAACGtgcataaaacagtaaaactgtttgcactacaaaccagtgtgttcataatgaatgatgatacatttaaataacataagacgcttattttcaatatcaagcagaaAAATGAACTCTTGAACagttaaaaatagctggacgTGGTTGAGACCTGGAGCTAGATTGGTGAAATTTACAAATGGTGCCTATTTTTACATCAAGAAAAATGTGGATAGTTggaaaacaggaaagaaaatgGTTGATAGTATGTCTTTCTTTGCTGTTAATGACGGGTAAAAGcataagttgttgtttttttttttgtactgtattaaAGTGGAAAAGCTTTAAATCGAGCAATTCACCACTTCAAAATAATCTTTgttgtatataatgtaattaaagacTGCCTTTTCCAATTCATTCAGCTGAGTATTTcagacttttaaaatgtttgagcatgttttaatattgtatttatgaaaatgtatgctatatttttgtattgtttgcgGACTCaactaattttaaatacaaatctaaaaacatttatgtcgtgtttgtgtcttttgtcTAGTAGAAAGAGCTGGCACTCATTAACTTCAGTTAATCAGCTAATCAACTTTGAGTTCAAGTTAATTAAGTCTAAATTTTGAGTCTCTTAGTGCTTAAGTCAGGATGATTAACCAGAAAGCCTTGTTAAGTAGGAGCTTTCCCATGAACTGCTTTATAAGAAGGTTATAAAAGGTCAAATTTAAATCAGTGATTAAAAACGccaaagtgtttttattttgcaataataaaacactttaaactaTAAAGCTACCGACACGAGTGGACAGAAGTAGAAGTGTTGTCAGAAATGCAcctttgtactttattttcacacaaatgtagtgtgaaaataatatttagatgcaaatttatttaaatattatttatagtgcTATAAACAAACGATATTAGTTTTTCACCcgttatttatgtgtgttttcctGATTGGCCGTGTTGTCTCGCGTCATCTCAGCGCGTTTAATCGCAATTGGTGAACAACTCGTGACGAGTGGCAAGGGAGCCAATCAACGAGAAGTACGTTGTACGACTGATGAGAAATGAGACAGGAACCTATGCATAACATATTTTCATAACAGCAGCTGGAAAATGCAGGGCGCCTCCTGAACAACAACATTTATAGCTCGTTTAAAAGACGCTTTTAAAGACGTATTTTCTGGGCACGAAACAGATACAGTAGAAACTACGATCTGTACAGCATGCCGGTGCCTACGTGGTGCGCAAGATCCGCGCCGCCCTTACAGAGGGAGAGCAGACAGAACAACCTGTGCTCACACCATGTAGTCTGGCTAAAGGAAAACAGCGCCATGCGGCATTGTCCGCTCCAGAGCCTAAGGGTCCTGCTGGGTCATCTGCATCTACGGAGACAACTGTACAAAAATATGGTTCCCTAGGGTAAAGGTCACGCAGAAGCAAATCTGGGCACAATGGAAGATGAAAAAACAGCATTGCTAGAGTTTTGGATGCTGGATGGTCATCTAAGCTTGTCCTTTAAATTTGGATTTTACCAGTAGAAGGGATTGTGGTAGAAATCTGACATCAGTCCAGTTTTGCTCTGCGTGACCTTTTGTTCTTAGATGCAAACACTCGCTCTTCATTTCcctttgtctctttctctcttgtttcCCATCAGCTGTAGTTTGTGAAGGTCTGTTTATCAACCTCTTCTTCAGGGGCGATTCAGATCTGATGTTTACCTGCAGCTTTTGTGTTTATAATCATCAACTAACTGACTGTACACTAGCTGAAGACATATCGCTGTCAGTAACAGTAACAGCTGACACTCTTTACAAGATTTCTTATTTtgtaatggcaaaaaaaattaataaaacagtccagtctt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030552 cAMP binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102110 lncRNA upstream 59152 10107840 ~ 10108184 (+) True G69042
TU102102 lncRNA upstream 65619 10092350 ~ 10101717 (+) True piga
XR_006251805.1 lncRNA downstream 335 10175048 ~ 10179380 (+) True LOC122351843
TU102183 lncRNA downstream 245769 10420482 ~ 10420692 (+) True G69089
TU102184 lncRNA downstream 247330 10422043 ~ 10422253 (+) True G69090
XR_006251822.1 lncRNA downstream 248501 10423214 ~ 10435142 (+) False LOC122351945
TU102185 lncRNA downstream 248602 10423315 ~ 10423577 (+) False LOC122351945
XM_043249111.1 mRNA upstream 914 10165180 ~ 10166422 (+) True mid1ip1a
XM_043249109.1 mRNA upstream 4400 10160341 ~ 10162936 (+) True otc
XM_043249096.1 mRNA upstream 28091 10117861 ~ 10139245 (+) False sytl5
XM_043249200.1 mRNA downstream 11033 10185746 ~ 10200828 (+) True impg2a
XM_043249198.1 mRNA downstream 11033 10185746 ~ 10200828 (+) False impg2a
XM_043249199.1 mRNA downstream 11033 10185746 ~ 10200828 (+) False impg2a
XM_043248806.1 mRNA downstream 34136 10208849 ~ 10226652 (+) True LOC122351607
XM_043248858.1 mRNA downstream 87665 10262378 ~ 10279903 (+) True dcbld2
XR_006251853.1 other upstream 610689 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1017670 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1017675 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1301439 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1733853 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 154018 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1308724 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1871786 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2452822 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2556123 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile