RNA id: TU102185



Basic Information


Item Value
RNA id TU102185
length 263
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id LOC122351945
representative False

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10423214 ~ 10435142 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttttatttttattgcaatgaCACGCAccgagaaaatgtttttgttatcgCGCATCGGTTTGAAGAAAATCTCAAATCCGCGCGCGATGAAAGTTTCTTACCTCTATCATAACTTCGACAAAATGTCTCGCGCTGGAAGGAGACTTATACGCGAGATGAGTCATCTGTGAACGCGCACACGAGCGGGTCGCGGCCAAAGCGCTCGGCATCTATCGCGCATCTAAAGGTAAAAGCCCGGTTCCCGCGGCATGCAGCGGAAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102184 lncRNA upstream 1062 10422043 ~ 10422253 (+) True G69090
TU102183 lncRNA upstream 2623 10420482 ~ 10420692 (+) True G69089
XR_006251805.1 lncRNA upstream 243935 10175048 ~ 10179380 (+) True LOC122351843
TU102130 lncRNA upstream 248532 10173283 ~ 10174783 (+) False si:dkey-100n23.5
TU102110 lncRNA upstream 315131 10107840 ~ 10108184 (+) True G69042
XR_006251821.1 lncRNA downstream 413 10423990 ~ 10435142 (+) True LOC122351945
TU102186 lncRNA downstream 559 10424136 ~ 10424408 (+) False LOC122351945
TU102162 lncRNA downstream 25124 10448701 ~ 10457161 (+) True G69080
TU102155 lncRNA downstream 25430 10449007 ~ 10458086 (+) True G69075
TU102207 lncRNA downstream 91729 10515306 ~ 10516332 (+) True G69109
XM_043249379.1 mRNA upstream 7492 10411680 ~ 10415823 (+) True LOC122351943
XM_043248102.1 mRNA upstream 15277 10405983 ~ 10408038 (+) True LOC122351200
XM_043248103.1 mRNA upstream 15277 10406257 ~ 10408038 (+) False LOC122351200
XM_043248099.1 mRNA upstream 17827 10402350 ~ 10405488 (+) True LOC122351198
XM_043249380.1 mRNA downstream 18493 10442070 ~ 10446473 (+) True spryd7b
XM_043249143.1 mRNA downstream 55845 10479422 ~ 10487305 (+) True cenpj
XM_043249144.1 mRNA downstream 82733 10506310 ~ 10515066 (+) True arhgap20
XM_043249145.1 mRNA downstream 82733 10506310 ~ 10515066 (+) False arhgap20
XM_043248814.1 mRNA downstream 102568 10526145 ~ 10531299 (+) True dnajc3a
XR_006251850.1 other upstream 28085 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 866668 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1273649 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1273654 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1557418 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 1059860 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1622922 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2203958 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2307259 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 2309056 12732633 ~ 12741060 (+) False LOC122351618