RNA id: TU102250


Basic Information

Item Value
RNA id TU102250
length 1247
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G69136
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10108975 ~ 10110243 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCAGTCGACTGATAACAACAATGGTAATCTTGCTGTTGTCACGGCGACAGGGGTCAGGGGTAAAGTCAGTGGGGTCGACAGCGTTAGGGATGACGGAGACGATTTCAGGGTCGAGAGCGGCTCGCAGCACAGTGTTCTCTTTACTAGTGTACGACACGCACACAATGTGATTGGTGTCGCACAGAGAGACAGTCAGCAGCTTGTTGGTCAGTACAGAGCTCAGGTCCGCAAATCCAAAGAGAGAGTGATCAGTGAATACAGTGTTGAGACCCATAGTCTTGGCATGGAACAGAGCATCATGGGCCATCGCGGAGAAGGAGCTGTGGGCGTGCACGATCGTGATGCGttcacgcacaaacacacaccggAGCAACGGCAAACTGTGAAAGCAGGTGGTCGCCGTGGACTGATTATACATgacctaaaacaaaaaatcagGATAGGACGGGTACGTTTTACATGTGTAATTTGACCTTCGTAAACCAATGTAATATACTTTAAAGCACACCTGCAGGGGTAGGTAATACACCTTGAGGCCGTTGGTCAGGTAGCGAATCCCACGGCGGTCTTCATATGCATGAGTTGCTATGACAACCTTGTGGCCCTTCTCTATGAGGCACTGCGAGAGCTGGTAGATGTGACTCTCCACACCACCCATGTTTGGGTAGAAGAAGTCTGACACCATACATATCCTGTGCTTCATGCCCTGCTCGCGATCAGTGGGCCGGGACGGGTCCAAAGATGAAGGGGTTTTAGGTGAATGTGTGTGACCTCTCTTCCTGTGGCCCATGGTGAGGTGAAGTCTTCAGTGCTCTGTTCTTCAAAAGCAGGGATGAACCTCTGCACAAAACAGTATATTGTGGTTGAAAACTTTACTACAGCACGGTAACTGCTGCTAAATATCCATTTCAGGCTACGGTGATGTGAcaataaagatttgttttaattgacgaacgaaataaattaattatgaaaGTACATTAACACTGAGTATCATTTACACGAATGACACCTAAAACGTGAAAACACTCACAGTCAATGGTTAGCTGTTAACATATGAGACTGAATCCTCAGCGAATTAACAAAGACTGGTTGAAGATGTGTGCTTGATCTAGATGCAtctttagcatattttaaatacatcgATAATTCGTCCTGTTCTGTCATTACAGAAATTATAACAGATGTTCTCTGgaataaaaaacaagcaaaacagtTCATCACGTCTACTTCCGTGGTTTTTgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102268 lncRNA downstream 21953 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 163173 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 217379 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 436074 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 454408 9654116 ~ 9654567 (-) True G68988
TU102285 lncRNA upstream 7550 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 26406 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 61526 10171769 ~ 10174858 (-) True G69157
TU102286 lncRNA upstream 63693 10173936 ~ 10242212 (-) False G69157
XR_006251782.1 lncRNA upstream 143690 10253933 ~ 10263447 (-) True LOC122351639
XM_043249101.1 mRNA downstream 7247 10098080 ~ 10101728 (-) True LOC122351802
XM_043249100.1 mRNA downstream 12731 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA downstream 12732 10092350 ~ 10096243 (-) True LOC122351801
XM_043248260.1 mRNA downstream 38090 10060318 ~ 10070885 (-) True gja5a
XM_043248468.1 mRNA downstream 51215 10051625 ~ 10057760 (-) True acp6
XM_043249103.1 mRNA upstream 30050 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA upstream 30050 10140293 ~ 10149219 (-) False srpx
XM_043249102.1 mRNA upstream 30050 10140293 ~ 10148852 (-) True srpx
XM_043249104.1 mRNA upstream 30050 10140293 ~ 10148851 (-) False srpx
XM_043249095.1 mRNA upstream 39632 10149875 ~ 10160006 (-) True rpgra
TU102057 other downstream 198797 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1767960 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2014128 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2090870 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2960355 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 323264 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 323264 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 323264 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 405029 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 569915 10680158 ~ 10686627 (-) False mrasa

Expression Profile