RNA id: TU102283


Basic Information

Item Value
RNA id TU102283
length 1677
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G69157
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10117793 ~ 10242212 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGGATTTATTTCACTGTAATCTGTAATTACGTCATcgttaaaatacagaaatttaaataaagatagATAGGACAGGTTAGTATATGTAGATTACAAAACAAAGCTaatgtaatgttgttttttaaggagaaaataacaaaacaaagactggactgttttattaattttttttgccattacaAAATAAGAAATCTTGTAAAGAGTGTCAGCTGTTACTGTTACTGACAGCGATATGTCTTCAGCTAGTGTACAGTCAGTTAGTTGATGATTATAAACACAAAAGCTGCAGGTAAACATCAGATCTGAATCGCCCCTGAAGAAGAGGTTGATAAACAGACCTTCACAAACTACAGCTGATGGgaaacaagagagaaagagacaaaggGAAATGAAGAGCGAGTGTTTGCATCTAAGAACAAAAGGTCACGCAGAGCAAAACTGGACTGATGTCAGATTTCTACCACAATCCCTTCTACTGGTAAAATCCAAATTTAAAGGACAAGCTTAGATGACCATCCAGCATCCAAAACTCTAGCAATGCTGTTTTTTCATCTTCCATTGTGCCCAGATTTGCTTCTGCGTGACCTTTACCCTAGGGAACCATATTTTTGTACAGTTGTCTCCGTAGATGCAGATGACCCAGCAGGACCCTTAGGCTCTGGAGCGGACAATGCCGCATGGCGCTGTTCCTTTAGCCAGACTACATGGTGTGAGCACAGGTTGTTCTGTCTGCTCTCCCTCTGTAAGGGCGGCGCGGATCTTGCGCACCACGTAGGCACCGGCTTCcgcaaacaatacaaaaatatagcatacattttcataaatacaatattaaaacatgctcaaacattttaaaagtctgAAATACTCAGCTGAATGAATTGGAAAAGGCAgtctttaattacattatatacaacAAAGATTATTTTGAAGTGGTGAATTGCTCGATTTAAAGCTTTTCCACTttaatacagtacaaaaaaaaaaacaacaacttatgCTTTTACCCGTCATTAACAGCAAAGAAAGACATACTATCAACcattttctttcctgttttccAACTATCCACATTTTTCTTGATGTAAAAATAGGCACCATTTGTAAATTTCACCAATCTAGCTCCAGGTCTCAACCAcgtccagctatttttaactGTTCAAGAGTTCATTTttctgcttgatattgaaaataagcgtcttatgttatttaaatgtatcatcattcattatgaacacactggtttgtagtgcaaacagttttactgttttatgcaCGTTGTTATTTTCCACGTTATGTACCTATGCCGTCTAACAAACCACATTCCTCACCCATAggctttttttcctctttgagGAAAAAGgtgcataataataattgctaTAATTAAAGTGTCAACACGAAAGCTGCAACACGGAAACACTGATAGAAATTCTTTAAAAGGcaaagaatgtaaaaatgtgcacgaacacacacacacacacacacacacacactttctaaaCATTCTCCCAGGGTCCCCTATCTTTTAAGGTCATGTCTGGGCTGTAAAATAGAATGTTGTTGTCTTCATCGTCAGAATCGGAGTGTGTATCAAGGTCATGTGTGTATCTTACATTTGCAGCGTGGTACTCTCTAATTCTTGTGCTGGCACACAGTCGAGACTGAATAGCAA

Function

GO:

id name namespace
GO:0030120 vesicle coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0030137 COPI-coated vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030660 Golgi-associated vesicle membrane cellular_component
GO:0030662 coated vesicle membrane cellular_component
GO:0030663 COPI-coated vesicle membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102297 lncRNA downstream 33010 10136649 ~ 10138759 (-) True G69168
TU102250 lncRNA downstream 61526 10108975 ~ 10110243 (-) True G69136
TU102268 lncRNA downstream 84747 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 225967 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 280173 9890651 ~ 9891596 (-) True G69004
XR_006251782.1 lncRNA upstream 79075 10253933 ~ 10263447 (-) True LOC122351639
TU102379 lncRNA upstream 251369 10426227 ~ 10426465 (-) True G69223
TU102394 lncRNA upstream 269435 10444293 ~ 10444641 (-) True G69228
TU102406 lncRNA upstream 270419 10445277 ~ 10446767 (-) True G69231
TU102549 lncRNA upstream 662654 10837512 ~ 10844040 (-) True G69346
XM_043249095.1 mRNA downstream 11763 10149875 ~ 10160006 (-) True rpgra
XM_043249103.1 mRNA downstream 22528 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA downstream 22550 10140293 ~ 10149219 (-) False srpx
XM_043249102.1 mRNA downstream 22917 10140293 ~ 10148852 (-) True srpx
XM_043249104.1 mRNA downstream 22918 10140293 ~ 10148851 (-) False srpx
XM_043248805.1 mRNA upstream 51529 10226387 ~ 10235671 (-) True tfg
XM_043248804.1 mRNA upstream 51529 10226387 ~ 10235664 (-) False tfg
XM_043249349.1 mRNA upstream 61440 10236298 ~ 10237964 (-) True jagn1a
XM_043249420.1 mRNA upstream 64439 10239297 ~ 10247492 (-) True col8a1a
XM_043248859.1 mRNA upstream 104000 10278858 ~ 10284622 (-) True tmem30c
TU102057 other downstream 261591 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1830754 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2076922 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2153664 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 3023149 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 258649 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 258649 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 258649 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 340414 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 505300 10680158 ~ 10686627 (-) False mrasa

Expression Profile