RNA id: TU102285


Basic Information

Item Value
RNA id TU102285
length 1067
lncRNA type read_through
GC content 0.33
exon number 2
gene id G69157
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10117793 ~ 10242212 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCCACTCGTGTCGGTAGCTTTAtagtttaaagtgttttattattgcaaaataaaaacactttggCGTTTTTAATCACTGATTTAAATTTGACCTTTTATAACCTTCTTATAAAGCAGTTCATGGGAAAGCTCCTACTTAACAAGGCTTTCTGGTTAATCATCCTGACTTAAGCACTAAGAGACTCAAAATTTAGACTTAATTAACTTGAACTCAAAGTTGATTAGCTGATTAACTGAAGTTAATGAGTGCCAGCTCTTTCTACTAgacaaaagacacaaacacgacataaatgtttttagatttgtatttaaaattagttGAGTCcgcaaacaatacaaaaatatagcatacattttcataaatacaatattaaaacatgctcaaacattttaaaagtctgAAATACTCAGCTGAATGAATTGGAAAAGGCAgtctttaattacattatatacaacAAAGATTATTTTGAAGTGGTGAATTGCTCGATTTAAAGCTTTTCCACTttaatacagtacaaaaaaaaaaacaacaacttatgCTTTTACCCGTCATTAACAGCAAAGAAAGACATACTATCAACcattttctttcctgttttccAACTATCCACATTTTTCTTGATGTAAAAATAGGCACCATTTGTAAATTTCACCAATCTAGCTCCAGGTCTCAACCAcgtccagctatttttaactGTTCAAGAGTTCATTTttctgcttgatattgaaaataagcgtcttatgttatttaaatgtatcatcattcattatgaacacactggtttgtagtgcaaacagttttactgttttatgcaCGTTGTTATTTTCCACGTTATGTACCTATGCCGTCTAACAAACCACATTCCTCACCCATAggctttttttcctctttgagGAAAAAGgtgcataataataattgctaTAATTAAAGTGTCAACACGAAAGCTGCAACACGGAAACACTGATAGAAATTCTTTAAAAGGcaaagaatgtaaaaatgtgcacgaacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102250 lncRNA downstream 7550 10108975 ~ 10110243 (-) True G69136
TU102268 lncRNA downstream 30771 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 171991 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 226197 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 444892 9672572 ~ 9672901 (-) True G68994
TU102286 lncRNA upstream 951 10173936 ~ 10242212 (-) False G69157
XR_006251782.1 lncRNA upstream 80948 10253933 ~ 10263447 (-) True LOC122351639
TU102379 lncRNA upstream 253242 10426227 ~ 10426465 (-) True G69223
TU102394 lncRNA upstream 271308 10444293 ~ 10444641 (-) True G69228
TU102406 lncRNA upstream 272292 10445277 ~ 10446767 (-) True G69231
XM_043249101.1 mRNA downstream 16065 10098080 ~ 10101728 (-) True LOC122351802
XM_043249100.1 mRNA downstream 21549 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA downstream 21550 10092350 ~ 10096243 (-) True LOC122351801
XM_043248260.1 mRNA downstream 46908 10060318 ~ 10070885 (-) True gja5a
XM_043248468.1 mRNA downstream 60033 10051625 ~ 10057760 (-) True acp6
XM_043248805.1 mRNA upstream 53402 10226387 ~ 10235671 (-) True tfg
XM_043248804.1 mRNA upstream 53402 10226387 ~ 10235664 (-) False tfg
XM_043249349.1 mRNA upstream 63313 10236298 ~ 10237964 (-) True jagn1a
XM_043249420.1 mRNA upstream 66312 10239297 ~ 10247492 (-) True col8a1a
XM_043248859.1 mRNA upstream 105873 10278858 ~ 10284622 (-) True tmem30c
TU102057 other downstream 207615 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1776778 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2022946 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2099688 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2969173 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 260522 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 260522 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 260522 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 342287 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 507173 10680158 ~ 10686627 (-) False mrasa

Expression Profile