RNA id: TU102575


Basic Information

Item Value
RNA id TU102575
length 617
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G69361
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10944439 ~ 10945055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCGCTTGGTGGTGGCGATGCTGTACTGtgcctgtgttttatttttttgatggaGGGGGATGCTGAAGTGTTGCGGTAGGAAGTCCCAATTGCCTTGGGAAAACTTAGCATGTAGCTCTAGCACACTCTTCTCTCATTAGCAACTGAGTCCGCGTGGTTTGCTCTAGCTGCTAGGCTGTATACTTGGCtctagcattttttttgtgtgtgtgtttttggtctAAAACAGCAGGGGTGATGTCTGGTATGTCCGGGGCTGCGGGAGGGCTTGCTCACAGGGTTTCAGCAGTGACTTTTCTTAAGCTTCACTGCTAGAGAGAGGATACAGTGATGTGCTCAACCTCTAAATACTGATTACTGGTGACCAGTGAAACCATCAGCACATAATTTTTCACTGTCGTCCACTGGAGAAAGGTTTATATTGCCTGAAAGAAGCTGACAAACCTAAACAATCATACCCTTATTCCATTAATCTCTACTCTCTATGTTGACAGTACACCTGCAAAACAAATGGCTGCATTGCCATTTTCTGTcttcaaatgtcattttataagCACTAAACAACAAAATACTGGATGGTTAGAAGGCAGATGTTAGGAATAACCCACATATAACT

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002263 cell activation involved in immune response biological_process
GO:0042113 B cell activation biological_process
GO:0016444 somatic cell DNA recombination biological_process
GO:0002285 lymphocyte activation involved in immune response biological_process
GO:0016445 somatic diversification of immunoglobulins biological_process
GO:0016447 somatic recombination of immunoglobulin gene segments biological_process
GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus biological_process
GO:0002312 B cell activation involved in immune response biological_process
GO:0045190 isotype switching biological_process
GO:0002366 leukocyte activation involved in immune response biological_process
GO:0002377 immunoglobulin production biological_process
GO:0002381 immunoglobulin production involved in immunoglobulin-mediated immune response biological_process
GO:0002440 production of molecular mediator of immune response biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0002200 somatic diversification of immune receptors biological_process
GO:0002204 somatic recombination of immunoglobulin genes involved in immune response biological_process
GO:0019724 B cell mediated immunity biological_process
GO:0002208 somatic diversification of immunoglobulins involved in immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251830.1 lncRNA downstream 35845 10849823 ~ 10908594 (-) False LOC122352018
XR_006251829.1 lncRNA downstream 35845 10883655 ~ 10908594 (-) True LOC122352018
TU102556 lncRNA downstream 52966 10849823 ~ 10891473 (-) False LOC122352018
TU102549 lncRNA downstream 100399 10837512 ~ 10844040 (-) True G69346
TU102406 lncRNA downstream 497672 10445277 ~ 10446767 (-) True G69231
TU102576 lncRNA upstream 1989 10947044 ~ 10953985 (-) True G69362
TU102615 lncRNA upstream 84322 11029377 ~ 11030493 (-) True G69396
TU102742 lncRNA upstream 413895 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 451621 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 845726 11790781 ~ 11954234 (-) True LOC122351998
XM_043249490.1 mRNA downstream 108469 10833262 ~ 10835970 (-) True zgc:162396
XM_043249489.1 mRNA downstream 111323 10829914 ~ 10833116 (-) True zgc:162780
XM_043249417.1 mRNA downstream 257812 10680158 ~ 10686627 (-) False mrasa
XM_043249418.1 mRNA downstream 259113 10680158 ~ 10685326 (-) True mrasa
XM_043248816.1 mRNA downstream 335048 10606194 ~ 10609391 (-) True LOC122351611
XM_043248825.1 mRNA upstream 96237 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA upstream 96237 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA upstream 96237 11041292 ~ 11045462 (-) True fzd5
XM_043249268.1 mRNA upstream 106039 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA upstream 114178 11059233 ~ 11085910 (-) False plekhm3
XR_006251823.1 other downstream 257812 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 424982 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 502567 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 551955 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1221936 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1477374 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1763576 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1792989 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile