RNA id: TU102576


Basic Information

Item Value
RNA id TU102576
length 2896
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G69362
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10947044 ~ 10953985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTTAGAGAGCTATAATAGCAGCGGCAGCGAGCTGGCGTCTCTCATACGGTCGGAGAGAACGCAACAAACAGAAGTAGAAGTTGCTGTTTGTAACGTGAAGCAATTCTACGCCTGTATGAAGTCATATCAGCTGGAAATCACAATTTACGGTCTCCCTGCCAGAGAGAATTAGCCAGAGTGGGGGTTGGATGGAGGGGTGGAGGCTGTTTCAACCATGCAGCGGGTCAGACGCCGGGGGACAAGACCGAGTCCTGCCTCTTCCTCATTGGCCAAAGAGCTCTACCGAGGGACAGGGGATGCTGGAAAGAAGAAGCAGATCAAACCCGGGATGACTGTGCAGCGTTCGCCGACGTGGCAGAGAAGGGGAATCAGAGGAGAAGTAAAAGGTTGCAGCATGAGATCATAGGAGTCACACTGAGGCACGTGCACTGAAGTGACCCTGACCTCTAACACCTTTGCTCTTGCATGAGAGAACACCTTTTTGTGGCTTTGGATGGAAGAAGCAAGAGGAGGAGATGAGAAATGAAGAGCATGGCGACGTCCTTCACCATTATTATCGAGTTTTTGGAGGGGGCTCTGCTACGGCACAAAAAAGGTCCTCTTTGAAAAGAAGGTTTTCAGATTCGGACCCCTTGAGAACAGAATGATTAATTTAGCACAAGGAATAATACTTTGGATGAAAAAGGGAATACATTTATCTTTTCGCTTTCATCCAGTCGTCTCTGACTGTGTGCGGTAGAGCCCAGGAAACCTTGAGGTATTGCGCAAATTCAGttgcaattaaagaaaaacaaaaaacggagTGCATGTATTCCAGAAGCTTGTTTTTCATTACCTGAATTGTTAGCCAAACATTCCTGCTGAACATCCCCCGTCTTTTCTTTTACTAGGGAAATTGAACCGTACAAATTCAGTCTGGAATTCTTCCAAATGGATCCAAAACCGTGAGAGTGCGCTGGAGCATCTCTGGTTTAGCATGTATGGAGTGAGGGGGATTCAGTGCAGCTCTATTGATGTGGCACACTGGGCTGTAATCTCATTAGTATGCTATAAGGCTGACCCGGCAGTGCTCGCCATGCTCACGGCATTATGGGGGAGAGGAGAGTGGGCCACACAACCCGGCATCACATCCATCCATTTGACACATTTAGAACTCCCTTACACTGTCCCCTCAAACACTCTCctcctttttccttttatatCAGGCCCTTAATCACATGTTCAGATGGTTAGACTGCTCATCTAGTAGCTCTTTTTTggtatttgttctttttttgcatcTAATCTCACTTTTATCTCTCCCTCTTTTATCCCCCTGTATCACTATACTTCCTCCATCTTTGTCACTGAAAGCGCGTCTATGAAAGcttgttgtctttctctctgtctatcaCCTCTCTTCTTTCTCGCGCTTTCTATCTCACACCTTTTATCCCGATCAGTCTCTCTGCCTCAACGTTAGTGTGTGAGAACcaagataaaaacacacagtaacACACTGATGGCGAATTGCTTCCCGATACATGTTCGCTTTACCATGTGGAGGTGGCCGCCTTCTCCATCGCATCATCTCTGTGCCTTATCTCTGCTCTGCtgagtgtaaatatttaaagaaggcTCCAGGAGCAGTGCTGGTAGCATCTCTGCAGACCGCACATCCCAACTGCCCACACTATCCATAGGCGGTGTGATGGAGAGCCCAGTGTGCAAATTATAGAATCACTTTGAGGGTGGTCGACTTTTTAAAGGAAATCTCTTTTTAAAGGAAATCTTTTTTTCCGTTTATGTTTGCTTAAATTGTCATTGgctttaataacacatttgttAACAATCTTAAAAGGATAActgctcaaaataaataaaaaaaaatggcacaaaCCTTCATGCCTGTCCAGTCAGTGGgcttaaaaacaatattgcaCCCCATCAGCTTTCACTGTGTagacaaaaaaactgaatcattgtttaaaatgtattcttttagaTGAAGGAGAAACctaaatttgtttttctttctaatgtcagtatttatagttttatcaCAGTTTAGTCTGATAATAATTCTAACTAGAAGGTGCTCAAGCAGCctgctgttgctatggttacctcaGGCGAACACACAATCTTcaacttttgtgtttgttgaaAAGTCAGAAAACCATGTTTAAGCATGTATTTAAATCCTCCTCCCACCCTTTTGTTTTTACTGCCTTTGGGGGTCCATGCTTTAATTAGCAGGGTCAGACATAATAATTTGCGCTCATGGAGAACCTTAGTCttgccatcatcatcatcatcatcatcatgtgtTATGGGCAGGGGGTTGTTCATTGCAGTCATAACCACATCCCCCTTCACTTCTGTGCTGTTACCAATGAGGACCGCGCTGAGCCTCAAGATATGAAACCTGACACTTGcctcaaatacacacataaacattcTTTAAAGCAATATAGTGCTCATCCAGCCTACAGCCGCTGATATTACACCCCAGCCCCCCTGTGCttgtgattttattaataatagagAAGAGGCAATATATCCTTCTGCCGTGGAAGGTATATGAGGTTAAGCATATTCTCTTGCTAATTCTACGTTGagattttaataaagaaaagatgCATAAGCCAGTGTCATAGCGGCACTGCAGTGCACACAGGGAGGCATGTTTGGCTGAATACTGATTATAATGGTGGCTGTTACGACTGGCATTTacatagaattaaaatgaatggctAACGTCCTGGGAACGTGCAAGCATTAAATCTATGCTCACCACTTTGTGTTAGTGAACCTCTTAAAACACTCCTCAGAGATGCATTTGTGCTTAAACATTTCCAATTTTCTTATGTAATATGGTGTCAGTATGGAAGGTAGATATGTGGTGACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251756.1 lncRNA downstream 300 10930480 ~ 10946744 (-) False LOC122351427
XR_006251755.1 lncRNA downstream 300 10939979 ~ 10946744 (-) True LOC122351427
TU102575 lncRNA downstream 1989 10944439 ~ 10945055 (-) True G69361
XR_006251830.1 lncRNA downstream 38450 10849823 ~ 10908594 (-) False LOC122352018
XR_006251829.1 lncRNA downstream 38450 10883655 ~ 10908594 (-) True LOC122352018
TU102615 lncRNA upstream 75392 11029377 ~ 11030493 (-) True G69396
TU102742 lncRNA upstream 404965 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 442691 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 836796 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 1131729 12085714 ~ 12156439 (-) False G69596
XM_043249490.1 mRNA downstream 111074 10833262 ~ 10835970 (-) True zgc:162396
XM_043249489.1 mRNA downstream 113928 10829914 ~ 10833116 (-) True zgc:162780
XM_043249417.1 mRNA downstream 260417 10680158 ~ 10686627 (-) False mrasa
XM_043249418.1 mRNA downstream 261718 10680158 ~ 10685326 (-) True mrasa
XM_043248816.1 mRNA downstream 337653 10606194 ~ 10609391 (-) True LOC122351611
XM_043248825.1 mRNA upstream 87307 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA upstream 87307 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA upstream 87307 11041292 ~ 11045462 (-) True fzd5
XM_043249268.1 mRNA upstream 97109 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA upstream 105248 11059233 ~ 11085910 (-) False plekhm3
XR_006251823.1 other downstream 260417 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 427587 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 505172 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 543025 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1213006 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1468444 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1754646 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1784059 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile