RNA id: TU102581


Basic Information

Item Value
RNA id TU102581
length 1023
lncRNA type sense_over
GC content 0.38
exon number 1
gene id creb1b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11021736 ~ 11030409 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCATTTTTCCTTTGTTGACGTTGAGTTGCTTCGGAAACTACAAGAAACAACTGAACAGTTAAACAATTGCCTTTGTCAACGCAAGttgtattttgtttacaaaGTTGTCTCTGTTGACCCAAACTGTTTAAGGCTTTTGATGATTTGTCAATgacttttaaagttgtttaaaagcaaaaggGTTTCACGTTTTGCGTATGTTTTGCACTGAGGACAGAAAGTTTTAAATGAGATGTTAGCGGactatgaattaaaaatgcccATCAACAACGCCAGTCTGTGCTGAAAGGTGCCCGTGTTGGCGAGTGCATCATCTGCTGCTACTCTTAAACTTCGAACCGTCTGCCTGACGTGTCATTTACGCATTCAGGCGTAACAAATTAGGGAAGCAATCTCTCCACAGCAGGCGCTCACGGTCCAGATCTGCAGTCTAACTGCTTATGCAAGCTGACATGCAACCCGATTTCCCTCACAGAACCAATTATTTTCTGACACAAGAATCTGAATTGACTCATCGAAGGACAGACTGACCTCAGCTTTCAGAGAAATGCAAATTCTGTCTGTTTTCAGTGATAgaatctttattcatttttctgaactgacattaccttttttttttttctttttttttttttctccactctTGTGTGTACCCCGTATGCAATGAGATTGACCTACTGCCATGCTGGCCAAAGTGAACTCCAAAATATGCGACTGTGTATGTTTGTCTTCATGCGTACAAAAGACCAATCAATCTAAAGCAATGTTTGATCCCACTCATTTTGGACAAACACGTCATGCACTTTTTGTATGATAGCTTTCACCTTTTGGACACTATGTACAAAACTGGTAGGATTTTATAGTGTTTCAAAGGTTTAAAAGTGTATTGTATATACTCTGTGACTTGGCTTACATTTTTAGAAGCTTTGCACTCTATTACTGTTAAAACACTTATGTATACTTGTTGTTGTTCCCCCACCTCCGTTTTGTATACAAATGtaaatctttaataaaatactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102562 lncRNA upstream 87856 10941308 ~ 10941524 (+) True G69358
TU102559 lncRNA upstream 105903 10923149 ~ 10923477 (+) True G69355
TU102528 lncRNA upstream 194698 10833788 ~ 10834682 (+) True G69340
XR_006251705.1 lncRNA upstream 214761 10803860 ~ 10814619 (+) True LOC122351147
TU102469 lncRNA upstream 242918 10786176 ~ 10786462 (+) True G69286
TU102625 lncRNA downstream 33199 11063601 ~ 11090434 (+) True G69403
TU102659 lncRNA downstream 170249 11200651 ~ 11201165 (+) True G69417
TU102718 lncRNA downstream 214749 11245151 ~ 11245478 (+) True G69459
TU102766 lncRNA downstream 389803 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA downstream 389803 11420205 ~ 11423317 (+) False G69483
XM_043248487.1 mRNA upstream 33324 10954192 ~ 10996056 (+) True klf7b
XM_043249483.1 mRNA upstream 179579 10842440 ~ 10849801 (+) True LOC122352013
XM_043249480.1 mRNA upstream 179579 10846287 ~ 10849801 (+) False LOC122352013
XM_043249482.1 mRNA upstream 179580 10846291 ~ 10849800 (+) False LOC122352013
XM_043249486.1 mRNA upstream 189693 10836088 ~ 10839687 (+) False LOC122352014
XM_043248826.1 mRNA downstream 1046 11031448 ~ 11040958 (+) True ccnyl1
XM_043249569.1 mRNA downstream 68642 11099044 ~ 11192927 (+) True kcnh3
XM_043248820.1 mRNA downstream 175435 11205837 ~ 11209581 (+) True dbr1
XM_043249310.1 mRNA downstream 186730 11217132 ~ 11222171 (+) True tbccd1
XM_043248564.1 mRNA downstream 194146 11224548 ~ 11225833 (+) True crygs2
XR_006251850.1 other upstream 634150 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1472733 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1879714 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1879719 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2163483 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 453035 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1016097 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1597133 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1700434 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1702231 12732633 ~ 12741060 (+) False LOC122351618