RNA id: XM_043249647.1


Basic Information

Item Value
RNA id XM_043249647.1
length 3494
RNA type mRNA
GC content 0.42
exon number 9
gene id creb1b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11021736 ~ 11030409 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGCAGTGGGGTTGATGATCGGATTTTCGTCTCGTTCTCTGTGTTGTTGTTCTCGGTGACGCGACGGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGCCTGAATAAAAGTGGAGCTCCGAGGGCTCGAGAGTGACGGAGGGAGTCTGTATCGATTTCTGCAGTGACGGAGAGTGAAGGCTTACCAGAGTCAGTGGACGTGTGAAAATTTTGTCTCTTATAGCTAACTCGATGACCATGGAGTCGGGAGCCGATGCCCAGCAGGGTGCAGACACCGCGGTCTCCGAAACTGAGAACCAACAGATCACACAGGCCCAAATCGCCACTCTTGCACAGGTAACGATGGCTGCCGGACACGCTAGTGCCACGGCACCCACAGTCACCCTGGTGCAGCTGCCCAATGGCCAGACAGTACAGGTGCACGGAGTGATTCAAGCTGCTCAACCTTCAGTCATTCAATCACCACAGGTGCAGACTGTCCAGATTTCTACAGTAGCGGAGAGTGAGGACTCACAGGAGTCGGTGGACAGCGTGACGGACTCTCAGAAACGAAGAGAGATCCTTTCTAGACGCCCCTCATATAGGAAAATCCTGAATGACCTGTCATCAGACGCTCCAGGAGTTCCGAGAATCGAAGAGGAGAAATCCGAGGAGGACGCAGCGCCTGCCATCACTACAGTGACCGTGCCAACTCCAATATATCAGACCAGCAGCGGCCAGTACATCGCCATTACACAGGGTGGAGCCATTCAGCTGGCAAATAATGGTACAGATGGAGTGCAAGGATTGCAGACTCTCACCATGACCAATGCCGCAGCAGCCCAGCCGGGGACCACTATCCTGCAGTACGCCCAGACCAGTGACGGTCAACAGATACTGGTGCCCAGCAATCAAGTGGTGGTACAAGCTGCTTCTGGAGATGTTCAGGCCTATCAAATCCGAACTGCCCCAACCAGCACAATTGCTCCAGGTGTGGTCATGGCATCTTCTCCAGCCCTGCCAAGTCAAGGAGGGGCTGAAGAGGCCACGCGTAAGAGGGAGGTACGCCTCATGAagaacagAGAGGCAGCTCGTGAGTGCCGCCGAAAGAAAAAGGAATACGTCAAGTGTCTGGAGAACCGTGTGGCTGTTTTGGAGAACCAGAACAAAACTCTCATCGAGGAACTCAAAGCACTCAAAGACCTGTACTGTCACAAATCAGAGTGACGTACCACCCTCTCTCCCTACGTTCTGGCAGACTTACGTGTACAGAGACTAAAGGGCGAGCCGGCCAGACGCGGACGCatgttttctaaatgttttcttattttaaattgctgcAGACTGCCTGTATGAACACACAAGTACATGAGGGAACCGAACACAAGCCCCTCGTCAACACAAATCTCCTCTAGAAATATTGGATCATgtcattaaagacaaaaaaaaatgctgaaaacctTACTGTGgacataaaaacacaagtaCGTTCTCAGCCGTCTTTACTTCTGGACTCAAACCGAAACTCAGAGGAGGGGTTTGTGGGAAAATGTTTACCTTTTCTTCCAGTGTGCTGGTGTATATTTCatcagtgatttttaaaagagataaaaaaaaattatgtacaaTAATAATTTCACTGGCATTTCAGTAGTATGGTAGGCATCGAGAAAGATTTCGTCTTGGAGTTGGCATCATTCCCTCTTGAGATTTTAAAGGTTTAACGTGTCTGACTGTTACTTTTATTTGGTGTAAAGTGATCTCGTGTTTTAAGTTgacatttttacctttaaatatgaacaaactaTATAGAATTATGAAAGCTGATTTCCAGAATCTATGCCAtttataaacagaaatattgtgtATTGTATACAGAACAAGATTATAGCCCATGTACATTTCCAGTTtgacattttgcttattttagaTGACAAAAATGTACCTAAATCTTTTAATTTCATACAATACTGCCTTTGCAGTAGCAACGGTTGCACAAACACAGTataaaaaggtcatttttatcGCAGGCATTTGGTCACTTATACACCAAAACTCACCTTACAGTGACAGGAATTGCtcaagtgatttttaaaagtatattttcagGTTAAACGTTTCTTTACGTTTATATTGATCATATTCGGCAGATCACTTTTGTGTTATGCTTGTGTATCATAGAGCTATAATTGGATGAAATACAATCCAATACATTCTATCTCTGGCATTATaaactaaagcatgttttataaatattacataagcTTTGATATTGTTATATGgtcaatttttcatttcaacacTAACTGGGAGGCAGTGTCTTTGTATTTGATAATGTGATAACATAAGTAAAGAGTACATGTTATCTATTATAGCATATGCATTTTTGGcagctatttatatatatatatatatatatatatatatatatatatatatatatatatatatatataaagatatgtTAAAAGGATTTCTCTTGGTTTCATTTTTCCTTTGTTGACGTTGAGTTGCTTCGGAAACTACAAGAAACAACTGAACAGTTAAACAATTGCCTTTGTCAACGCAAGttgtattttgtttacaaaGTTGTCTCTGTTGACCCAAACTGTTTAAGGCTTTTGATGATTTGTCAATgacttttaaagttgtttaaaagcaaaaggGTTTCACGTTTTGCGTATGTTTTGCACTGAGGACAGAAAGTTTTAAATGAGATGTTAGCGGactatgaattaaaaatgcccATCAACAACGCCAGTCTGTGCTGAAAGGTGCCCGTGTTGGCGAGTGCATCATCTGCTGCTACTCTTAAACTTCGAACCGTCTGCCTGACGTGTCATTTACGCATTCAGGCGTAACAAATTAGGGAAGCAATCTCTCCACAGCAGGCGCTCACGGTCCAGATCTGCAGTCTAACTGCTTATGCAAGCTGACATGCAACCCGATTTCCCTCACAGAACCAATTATTTTCTGACACAAGAATCTGAATTGACTCATCGAAGGACAGACTGACCTCAGCTTTCAGAGAAATGCAAATTCTGTCTGTTTTCAGTGATAgaatctttattcatttttctgaactgacattaccttttttttttttctttttttttttttctccactctTGTGTGTACCCCGTATGCAATGAGATTGACCTACTGCCATGCTGGCCAAAGTGAACTCCAAAATATGCGACTGTGTATGTTTGTCTTCATGCGTACAAAAGACCAATCAATCTAAAGCAATGTTTGATCCCACTCATTTTGGACAAACACGTCATGCACTTTTTGTATGATAGCTTTCACCTTTTGGACACTATGTACAAAACTGGTAGGATTTTATAGTGTTTCAAAGGTTTAAAAGTGTATTGTATATACTCTGTGACTTGGCTTACATTTTTAGAAGCTTTGCACTCTATTACTGTTAAAACACTTATGTATACTTGTTGTTGTTCCCCCACCTCCGTTTTGTATACAAATGtaaatctttaataaaatactaatactgCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05870 CREB1; cyclic AMP-responsive element-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102562 lncRNA upstream 80212 10941308 ~ 10941524 (+) True G69358
TU102559 lncRNA upstream 98259 10923149 ~ 10923477 (+) True G69355
TU102528 lncRNA upstream 187054 10833788 ~ 10834682 (+) True G69340
XR_006251705.1 lncRNA upstream 207117 10803860 ~ 10814619 (+) True LOC122351147
TU102469 lncRNA upstream 235274 10786176 ~ 10786462 (+) True G69286
TU102625 lncRNA downstream 33192 11063601 ~ 11090434 (+) True G69403
TU102659 lncRNA downstream 170242 11200651 ~ 11201165 (+) True G69417
TU102718 lncRNA downstream 214742 11245151 ~ 11245478 (+) True G69459
TU102766 lncRNA downstream 389796 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA downstream 389796 11420205 ~ 11423317 (+) False G69483
XM_043248487.1 mRNA upstream 25680 10954192 ~ 10996056 (+) True klf7b
XM_043249483.1 mRNA upstream 171935 10842440 ~ 10849801 (+) True LOC122352013
XM_043249480.1 mRNA upstream 171935 10846287 ~ 10849801 (+) False LOC122352013
XM_043249482.1 mRNA upstream 171936 10846291 ~ 10849800 (+) False LOC122352013
XM_043249486.1 mRNA upstream 182049 10836088 ~ 10839687 (+) False LOC122352014
XM_043248826.1 mRNA downstream 1039 11031448 ~ 11040958 (+) True ccnyl1
XM_043249569.1 mRNA downstream 68635 11099044 ~ 11192927 (+) True kcnh3
XM_043248820.1 mRNA downstream 175428 11205837 ~ 11209581 (+) True dbr1
XM_043249310.1 mRNA downstream 186723 11217132 ~ 11222171 (+) True tbccd1
XM_043248564.1 mRNA downstream 194139 11224548 ~ 11225833 (+) True crygs2
XR_006251850.1 other upstream 626506 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1465089 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1872070 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1872075 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2155839 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 453028 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1016090 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1597126 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1700427 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1702224 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile