RNA id: TU102615



Basic Information


Item Value
RNA id TU102615
length 1117
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G69396
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11029377 ~ 11030493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAATAACAAGTTTTATTCACAGCTTTGAAAAATACGAGCGTTAACCATATCGCTTTACAATATTTCCAACCACAACACCCATTGTGcagtattagtattttattaaagatttaCATTTGTATACAAAACGGAGGTGGGGGAACAACAACAAGTATACATAAGTGTTTTAACAGTAATAGAGTGCAAAGCTTCTAAAAATGTAAGCCAAGTCACAGAGTATATACAATACACTTTTAAACCTTTGAAACACTATAAAATCCTACCAGTTTTGTACATAGTGTCCAAAAGGTGAAAGCTATCATACAAAAAGTGCATGACGTGTTTGTCCAAAATGAGTGGGATCAAACATTGCTTTAGATTGATTGGTCTTTTGTACGCATGAAGACAAACATACACAGTCGCATATTTTGGAGTTCACTTTGGCCAGCATGGCAGTAGGTCAATCTCATTGCATACGGGGTACACACAagagtggagaaaaaaaaaaaaagaaaaaaaaaaaaggtaatgtcagttcagaaaaatgaataaagattcTATCACTGAAAACAGACAGAATTTGCATTTCTCTGAAAGCTGAGGTCAGTCTGTCCTTCGATGAGTCAATTCAGATTCTTGTGTCAGAAAATAATTGGTTCTGTGAGGGAAATCGGGTTGCATGTCAGCTTGCATAAGCAGTTAGACTGCAGATCTGGACCGTGAGCGCCTGCTGTGGAGAGATTGCTTCCCTAATTTGTTACGCCTGAATGCGTAAATGACACGTCAGGCAGACGGTTCGAAGTTTAAGAGTAGCAGCAGATGATGCACTCGCCAACACGGGCACCTTTCAGCACAGACTGGCGTTGTTGATgggcatttttaattcatagtCCGCTAACATCTCATTTAAAACTTTCTGTCCTCAGTGCAAAACATACGCAAAACGTGAAACccttttgcttttaaacaactttaaaagtcATTGACAAATCATCAAAAGCCTTAAACAGTTTGGGTCAACAGAGACAACtttgtaaacaaaatacaaCTTGCGTTGACAAAGGCAATTGTTTAACTGTTCAGTTGTTTCTTGTAGTTTCCGAAGCAACTCAACGTCAACAAAGGAAAAATGAAACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102576 lncRNA downstream 75392 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 82633 10930480 ~ 10946744 (-) False LOC122351427
XR_006251755.1 lncRNA downstream 82633 10939979 ~ 10946744 (-) True LOC122351427
TU102575 lncRNA downstream 84322 10944439 ~ 10945055 (-) True G69361
XR_006251830.1 lncRNA downstream 120783 10849823 ~ 10908594 (-) False LOC122352018
TU102742 lncRNA upstream 328457 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 366183 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 760288 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 1055221 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 1055221 12085714 ~ 12156439 (-) True G69596
XM_043249490.1 mRNA downstream 193407 10833262 ~ 10835970 (-) True zgc:162396
XM_043249489.1 mRNA downstream 196261 10829914 ~ 10833116 (-) True zgc:162780
XM_043249417.1 mRNA downstream 342750 10680158 ~ 10686627 (-) False mrasa
XM_043249418.1 mRNA downstream 344051 10680158 ~ 10685326 (-) True mrasa
XM_043248816.1 mRNA downstream 419986 10606194 ~ 10609391 (-) True LOC122351611
XM_043248825.1 mRNA upstream 10799 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA upstream 10799 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA upstream 10799 11041292 ~ 11045462 (-) True fzd5
XM_043249268.1 mRNA upstream 20601 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA upstream 28740 11059233 ~ 11085910 (-) False plekhm3
XR_006251823.1 other downstream 342750 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 509920 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 587505 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 466517 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1136498 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1391936 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1678138 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1707551 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile