RNA id: TU102754



Basic Information


Item Value
RNA id TU102754
length 1108
RNA type TUCP
GC content 0.46
exon number 10
gene id LOC122352020
representative False

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11465604 ~ 11490149 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGCACAGACTCTCCTGTTGATGCTGGCGATGTCATTGTGGTGCTCAACAGCTTCCACAGCAAGATCATCAAAGTTAGAGTCCAGAAAAGGCCTGACAAACTCAATGAGGATCTTCTAAGCGAAGGAACAGAATCCAAAGGCTTGTGGGATTCCATAACCAGTGTGTGGAGTTCTTTGGAGAAAAGCTTTGCCGGTGGCCCGAGTGTGGACGAAGATGACAAGAAGAAAGACATTCTCAACATTTTCTCAGTAGCCTCTGGACATTTATATGAGCGCTTCCTGAGAATAATGATGCTGTCTGTTCTTCAACACACCAAAACCCCTGTCAAGTTCTGGTTCCTCAAAAACTACCTCTCCCCCTCATTCAAGGACACCATCTCTCACATGGCGAAGGCTTATGGTTTCCAGTATGAGCTGGTCCAGTATAAGTGGCCTCGCTGGCTTCACCAGCAGACAGAAAAGCAACGTATCATCTGGGGTTATAAGATCCTTTTCCTGGATGTGCTTTTCCCACTGGCTGTGGACAAGATCATCTTTGTAGATGCTGATCAGATTGTCAGGGCAGATTTGAAGGAGCTGAGAGATCTGGATCTAGAGGGCGCCCCCTATGGGTACACACCATTCTGCGACAGCCGAAAAGAAATGGAAGGATATCGTTTTTGGAAGACTGGCTACTGGGCTTCTCATCTTGGACACAGGAAATACCACATCAGTGCATTATATGTGGTGGACTTAAAGAAATTCAGAAAGATCGCCGCTGGAGACCGCCTCAGGGGGCAGTATCAAGCCTTAAGCCAAGATCCCAACAGTCTGTCCAACTTGGACCAGGACCTTCCCAACAACATGATCCATCAAGTAGCCATCAAGTCTTTACCTCAAGAGTGGCTGTGGTGTGAAACCTGGTGTGATGACAAATCCAAAACTACCGCCAAGACCATAGATCTGTGCAATAACCCAAAGACCAAAGAGCCCAAGTTAAGTGCAGCGGTGAGGATTGTTTCAGAATGGTCCAAGTACGACAATGAGATAAAGCATTTTCTCAAACGGGTGaaggagcagaaggagaaaatTACTAAGGGTagatcttcatcatcatcatcatcttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102766 lncRNA upstream 60120 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA upstream 60120 11420205 ~ 11423317 (+) False G69483
TU102718 lncRNA upstream 237959 11245151 ~ 11245478 (+) True G69459
TU102659 lncRNA upstream 282272 11200651 ~ 11201165 (+) True G69417
TU102625 lncRNA upstream 393003 11063601 ~ 11090434 (+) True G69403
TU102823 lncRNA downstream 489785 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA downstream 515705 12005701 ~ 12009922 (+) False G69518
TU102824 lncRNA downstream 515705 12005701 ~ 12009922 (+) True G69518
TU102851 lncRNA downstream 709938 12199934 ~ 12200597 (+) True G69539
TU102902 lncRNA downstream 832255 12322251 ~ 12322532 (+) True G69578
XM_043249225.1 mRNA upstream 97443 11382392 ~ 11385994 (+) True nepro
XM_043249308.1 mRNA upstream 101485 11379870 ~ 11381952 (+) True tex30
XM_043248189.1 mRNA upstream 104015 11372926 ~ 11379422 (+) True poglut2
XM_043248862.1 mRNA upstream 110866 11263726 ~ 11372571 (+) True stxbp5l
XM_043249679.1 mRNA upstream 239007 11232007 ~ 11244430 (+) True gtf2e1
XM_043249531.1 mRNA downstream 556478 12046474 ~ 12086508 (+) True arhgap15
XM_043248390.1 mRNA downstream 632235 12122231 ~ 12155973 (+) True LOC122351360
XM_043248569.1 mRNA downstream 902290 12392286 ~ 12429356 (+) True acvr2aa
XM_043248560.1 mRNA downstream 944992 12434988 ~ 12445737 (+) False epc2
XM_043248559.1 mRNA downstream 944994 12434990 ~ 12445737 (+) False epc2
XR_006251850.1 other upstream 1088207 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1926790 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2333771 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2333776 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2617540 8864649 ~ 8865897 (+) False cryba2b
TU102836 other downstream 556503 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1137539 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1240840 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1242637 12732633 ~ 12741060 (+) False LOC122351618
TU103123 other downstream 1282092 12772088 ~ 12773109 (+) False LOC122351618

Expression Profile