RNA id: XM_043249494.1


Basic Information

Item Value
RNA id XM_043249494.1
length 4748
RNA type mRNA
GC content 0.46
exon number 41
gene id LOC122352020
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11465604 ~ 11490149 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACAGGGAATTAAAGATGCAGGACCCCTCAATGGCGGCGTCCTGTGAAACCGGGTAACACAGCGGCTCAACGTCCGATGATTTAGCAGTGTCTGATCATGAGGGTGGTCTTTGTTGTGCTGGTCTTGCTGAGGGTCCAGCATGTGTACTCTGCATCTAAAGGAGTCGTCGCCACTCTTCAGGCTAAATGGTCCATGACCCCTCTCCTGCTGGAGACAAGtgAGTTCATCAGAGAAGATGGTGAAGAGAAGTTCTGGCAGTTTGTTGATACTGTAAAAGAGTTAACTGTTTACAAAAATGGAgAGTCAGTCCGGTCATATTATAACCTGATAATCAAGAAGGCTGGACAGTTCTTGACAGATCTTCAGGTCAGCCTGTTGAAACTGTCTCTATCTCTCAGGGCCTATTCACCGGCTGTGCATGCTTTCCAACAAATAGCAAGTGATGAACCTCCTCCTGATGGCTGCGCTGCTTTTGTGGTTGTTCACGGTCAAAATGCATGCAGCACCAAGGATATGAAGAAGCTCTTGAAGACCGCAGCAGGCAGGCCAAGACCTTACCTGTACAAGTCTGACCATCAGTACCCCGGAGTCAACGGGACAGACCTGCCTGTAGCCGTTCTTTATGCTGAAATCGGCACAAAGGAGTTTAATACTTTTCATAAGGTTCTGTCAGAGCGGGCACAGGAGGGTAAAGTCATCTATGTGCTGCGACACTTTTTGTCTGAGTCAAAAAGTGAAAAGATGTTGCTGTCTGGATACGGTGTTGAACTGGCAATTAAAAGCACAGAGTACAAAGCCGTTGATGACACACAAGTTAAAGAATCCAAATCGGTTTCCACTGATAATGAGGATGAAAATGATGAAGTCCAAGGATTTCTGTTTGGCAAATTAAAAAAGTCTCACCCAGAGCTTCAGGATGAACTTGGAGAGCTTAGGAAGCATCTACTGGAGAGCACCAATGACATGACTCCTCTCAAAGTGTGGGAGCTCCAAGACCTCAGTTTCCAGGCAGCATCTCGTATCATGACTGTGCCAAAGTTTGATTCGCTCAAATTGATGCAAGACCTCAGCCAAAATTTCCCAAGCAGAGCCAGATCACTGACAAGAGTGGCCGTAAACCAAGACATGAGGAAAGAAATAGAAGACAATCAAAAGAGGTTGAGCGAGTCGATGGGGATCCAACCTGGAGATGCCAGTCTGTTTATTAATGGAATACACATTGACTTGGACATTCATAACCCTTTCAGCATCCTGGACATTCTCAGAACCGAGGCTACGATTCTCGAAGGTCTTCATAACCTTGGCATCAGAGGAAGCAGCGTTAGTAAGTTTCTGCATTTGCCTTCATCAACCACTGTAGAGGACAGCTACGCTCTGGACATCCGCCACTCATCCATTATGTGGGTTAATGATATTGAGAAGGACTCCATGTATCGTCACTGGCCCTCAAGTGTCCAGGAACTCCTCAGAGCTACATTTCCTGGAGTTATTCGACAAATACGCCGTAACTTCTATAACCTGGTTCTGTTTCTTGACCCAGTCCAAGAAGAGAGCATTGAGTTGGTGAAATTAGCAGAACTATTTTACAAACATAACATTCCACTCAGGATTGGGTTTGTGCTGGTTGTCAGTGCAGATGATAAAGTGGATGGGTATTTGGATGCAGGTGTTGCTCTCTTTCGGCTGTTAAACTACATCTCAGAGGAGTATGACGAAGCACAGGCTTTTACGTCCATGGTGTCAATATATAACAGGGTGGAAATTGGAGAGACTCTCTCTGTGGATACAGTAACTGCAtatctgaaaaagaaatttCCAAAAGCAAATGCTGCCAGAATTCTTGGAGTGGATTCAANTTTAAACTGCTGTATGTACGCTGGAGGCGGGTTTTACAGAAAGAGCGGCTTAGGTTCTTTACCAGTGGGTCTATTCAATGGTGTTCCACTCAGTAGTGAGGAGATGGACCCAGAAGAGCTAGAGACAGTTCTTCTGCAAAAAATCATGGAAACTACCAACTTCTTCCAAAGATCTGTCTTTATGGGTCAGATCACAGATAGTGTCGATGTGGTGGACTTTCTCATGGAGCAGGCCAATGTAGTTCCCCGTATCAACCCTCTCATTCTGAGCTCTGAGAGGCGATATCTGGATTTCACTTCCTCACCAGTTGCTGATGACTGGGATGACACAACTATGTTCTCATACCTGGACTCAAAAGACAAAACGGCAATTGTCTCTAAGAGAATGAAGTATTTCACCAGAGATGAAGAAGAGGTGTTATACGGAGTGACTCTGTGGATTGTAGCAGATATTGAACAGTCCTCTGGGAGGCAGTTGCTCCGGAATGCCTTGAAACATATGAAATCCGGCAGCTCTAACTGTCGCGTCGGAGTGATCAATAACCCAAGTGGAAAGCCCACAGAGGACACCAGTGCTCTGTACCGAGCCGTCTGGGCTTCTCTCCTCACACAAAGCAACAAGAACTCGCTCGACTTCACCCTAAAACTCCTCAAAGAAGAAAATGTGGAGCTCCTCAAACAAGGCACCAAGATTAAGCACTTACTTAAACAGGGTATGGACCATGATGCCTTTGAGAAGAAGTTCAACACGATGGAGGTGGACTTTCTGCACAGCCAGCAGAAGTACTGTAAGGAAGTTCTGAAGCTAAAAGCCGGACAGAGAGCTGTAGTCAGCAACGGCAGGACCCTGAGCCTACTGGATGAGGAAGAAGAGTTTAATGTGGAAGATTTCCATCTGCTAGAGAAGATCACACTTCGCACTTCAGCAGAAAAGATTAAATCTAAGATCAAGCAGATGAACTTGAATGCCCAAAAGGCCAGTGATCTAATCATGAAAGTAGACGCTCTTCTCACTGCATCACCTAAAGGAGAGGCCAGAAAAGACGTCAAATTTTTGAAGGACAAACACAGCGTTCTTCAGCTGGCACAGCGGGAAGATGAGGTGTCCTATGATGTTGTTGCCATCGTGGACCCTCTGACCAGAGATGCACAGAAGTTGGCTCCTTTATTAGTTGTGCTTGGTCAAGTGGTCAATATGAAAGTGCAGGTGTTCATGAACTGTCGAGCCAAGCTGTCTGAGATGCCCCTGAAGAGCTTTTATCGATATGTTTTGGAACCGGATGTTTCATTCTTCGGCAACAACTCCATTTCCCCTGGCCCTGTGGCCCGCTTTACTGAAATCCCAGAATCTCCTCTGCTCACTTTTAATATGATCACCCCAGAGAGCTGGATGGTAGAGGCGGTCAGGAGCCCATATGATCTAGATAACATCCACCTTCAGGAGGTCAGCGGTGTAGTCAATGCAGAGTATGAGCTTGAGTATCTGCTGTTGGAGGGCCACTGTTTTGACCTGTCCACAGGTCAGCCTCCCAGAGGGCTTCAGTTCACGCTGGGCATGAGACAGGAACCTCTCATACATGACACCATTGTCATGGCCAACCTGGGCTATTTCCAGTTAAAAGCCAACCCCGGTGCCTGGATCCTAAGGCTCGGAAAGGGCAGATATaccatttattgttcatttagtgttgtttatgtatgttttaggCATGATGGCACAGACTCTCCTGTTGATGCTGGCGATGTCATTGTGGTGCTCAACAGCTTCCACAGCAAGATCATCAAAGTTAGAGTCCAGAAAAGGCCTGACAAACTCAATGAGGATCTTCTAAGCGAAGGAACAGAATCCAAAGGCTTGTGGGATTCCATAACCAGTGTGTGGAGTTCTTTGGAGAAAAGCTTTGCCGGTGGCCCGAGTGTGGACGAAGATGACAAGAAGAAAGACATTCTCAACATTTTCTCAGTAGCCTCTGGACATTTATATGAGCGCTTCCTGAGAATAATGATGCTGTCTGTTCTTCAACACACCAAAACCCCTGTCAAGTTCTGGTTCCTCAAAAACTACCTCTCCCCCTCATTCAAGGACACCATCTCTCACATGGCGAAGGCTTATGGTTTCCAGTATGAGCTGGTCCAGTATAAGTGGCCTCGCTGGCTTCACCAGCAGACAGAAAAGCAACGTATCATCTGGGGTTATAAGATCCTTTTCCTGGATGTGCTTTTCCCACTGGCTGTGGACAAGATCATCTTTGTAGATGCTGATCAGATTGTCAGGGCAGATTTGAAGGAGCTGAGAGATCTGGATCTAGAGGGCGCCCCCTATGGGTACACACCATTCTGCGACAGCCGAAAAGAAATGGAAGGATATCGTTTTTGGAAGACTGGCTACTGGGCTTCTCATCTTGGACACAGGAAATACCACATCAGTGCATTATATGTGGTGGACTTAAAGAAATTCAGAAAGATCGCCGCTGGAGACCGCCTCAGGGGGCAGTATCAAGCCTTAAGCCAAGATCCCAACAGTCTGTCCAACTTGGACCAGGACCTTCCCAACAACATGATCCATCAAGTAGCCATCAAGTCTTTACCTCAAGAGTGGCTGTGGTGTGAAACCTGGTGTGATGACAAATCCAAAACTACCGCCAAGACCATAGATCTGTGCAATAACCCAAAGACCAAAGAGCCCAAGTTAAGTGCAGCGGTGAGGATTGTTTCAGAATGGTCCAAGTACGACAATGAGATAAAGCATTTTCTCAAACGGGTGaaggagcagaaggagaaaatTACTAAGGGTagatcttcatcatcatcatcatcttcatcaccaCAGCACACAGGCACTCGACGTGATGAACTTTAGCACTTGAGTGCTCATGCTGGCACCTATCTT

Function

GO: NA

KEGG:

id description
K11718 HUGT; UDP-glucose:glycoprotein glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102766 lncRNA upstream 42287 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA upstream 42287 11420205 ~ 11423317 (+) False G69483
TU102718 lncRNA upstream 220126 11245151 ~ 11245478 (+) True G69459
TU102659 lncRNA upstream 264439 11200651 ~ 11201165 (+) True G69417
TU102625 lncRNA upstream 375170 11063601 ~ 11090434 (+) True G69403
TU102823 lncRNA downstream 489632 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA downstream 515552 12005701 ~ 12009922 (+) False G69518
TU102824 lncRNA downstream 515552 12005701 ~ 12009922 (+) True G69518
TU102851 lncRNA downstream 709785 12199934 ~ 12200597 (+) True G69539
TU102902 lncRNA downstream 832102 12322251 ~ 12322532 (+) True G69578
XM_043249225.1 mRNA upstream 79610 11382392 ~ 11385994 (+) True nepro
XM_043249308.1 mRNA upstream 83652 11379870 ~ 11381952 (+) True tex30
XM_043248189.1 mRNA upstream 86182 11372926 ~ 11379422 (+) True poglut2
XM_043248862.1 mRNA upstream 93033 11263726 ~ 11372571 (+) True stxbp5l
XM_043249679.1 mRNA upstream 221174 11232007 ~ 11244430 (+) True gtf2e1
XM_043249531.1 mRNA downstream 556325 12046474 ~ 12086508 (+) True arhgap15
XM_043248390.1 mRNA downstream 632082 12122231 ~ 12155973 (+) True LOC122351360
XM_043248569.1 mRNA downstream 902137 12392286 ~ 12429356 (+) True acvr2aa
XM_043248560.1 mRNA downstream 944839 12434988 ~ 12445737 (+) False epc2
XM_043248559.1 mRNA downstream 944841 12434990 ~ 12445737 (+) False epc2
XR_006251850.1 other upstream 1070374 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1908957 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2315938 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2315943 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2599707 8864649 ~ 8865897 (+) False cryba2b
TU102836 other downstream 556350 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1137386 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1240687 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1242484 12732633 ~ 12741060 (+) False LOC122351618
TU103123 other downstream 1281939 12772088 ~ 12773109 (+) False LOC122351618

Expression Profile