RNA id: XM_043249224.1


Basic Information

Item Value
RNA id XM_043249224.1
length 1529
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122351858
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11396666 ~ 11493120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTAAAAGTTCActttttgtcacccaggatgcAGGAAAGAGGGCACTAAGAGGGGAAAAGgtgtttctaaaaatgtaaaaaaaaaacaatctggaATCTTAGCTCGCTTTGTCAAAGAAGCATCATCACCTCAATCATTCGATTGGAACCTACACCATCTTCCCTACAGGATCCTACTTTATTTCTTCACTACTTTATTTAAACTCACTTTTCTCAACATGTGCAATCAACCAGACCCCGTCTGCCCCATGAACGCTACCATCTGCACGGGCACGTCCTGCCTGGTGCCCTATGATCCGTTCAATGACATCCTCAGCACGGTGATGAGCACCACGCTTACCATCATGCTGGCTTTGGTCATGTTTTCGATGGGTTGCACTGTTGAAGCAAGAAAGCTGTGGGTGCACATCCGCAGACCCTGGGGCATTTTTATCGGTTTCCTGTGCCAGTTTGGCATTATGCCTTTTACAGCTTTTGCGCTTTCGTTGATTTTCAACGTGCTTCCAATCCAGGCTGtagtcatcatcatcatgggCTGTTGCCCCGGAGGTTCCAGCTCTAATGTCTTCTGCTACTGGCTCGATGGAGACATGGACCTAAGCATCAGCATGACCACATGTTCTTCAATTCTGGCTCTGGGAATGATGCCTCTTTGTCTTCTCATCTACACCACAGTGTGGACTTCAGGCGATGCTATCCAGATCCCTTACGACAGCATCGGAACAACATTAGTGGCTTTACTTGTGCCTGTCTGTCTTGGGATATACACGAAACACAGGTGGCCCAAAGCAGCCAAAAAGATCCTCAAAGTGGGATCTGTGGTTGGAATCCTTCTAGTCATCGTCATTGCAGTCATAGGTGCTGTTCTGTATCAGTCCTCGTGGACCATTGCTCCTTCGCTTTGGATAATCGGTACCATTTATCCATTCATTGGCTTTGGTCTCGGCTTTCTCCTGTCACGCTTTGTGGGACAGCCTTGGCACAGGTGCCGCACCATTGCTTTAGAAACAGGCATGCAGAACTCCCAGCTGGCCAGTACTATTACCCAGCTTTCCTTTAGCCCTGCGGAGCTTGAGCTCATGTTTGCTTTCCCCTTAATCTACAGTATCTTCCAACTAGTTGTAGCTGGGATTGCAATAGGAATTTATTACTCAATAAAGCGCTGTAGGGGGGGTGCATCAGAGGAGGATGGGGAAGGCGCGCGGAGCACAGTTGAGGATCAGGATAAGCAGAATTACGCTTTGGAGAATGGTGGCTTTCATATTGATGAGAATGGCAACACTGAGAATAAGGATAAAGGTACAAAGTTGTGAGCCAAACATTGTTCTGCAAGCATGTGTGACCAAAGCGGTCAGCACTGACCTTCTGAAGGCATGAACTTTAAACAAGCTATTCAAGCTCAACTAGTGAGTATATCGATAAACTCATTTTCAGTCGAGACAACTGGATGCACTTTTCCATGTTataaaaagcctttaaatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0015711 organic anion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
K14342 SLC10A2, ASBT; solute carrier family 10 (sodium/bile acid cotransporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102742 lncRNA downstream 30847 11358950 ~ 11365819 (-) True G69467
TU102615 lncRNA downstream 366173 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 442681 10947044 ~ 10953985 (-) True G69362
XR_006251755.1 lncRNA downstream 449922 10939979 ~ 10946744 (-) True LOC122351427
XR_006251827.1 lncRNA upstream 391566 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 686499 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 686499 12085714 ~ 12156439 (-) True G69596
XR_006251707.1 lncRNA upstream 868897 12268112 ~ 12270147 (-) True LOC122351183
TU102946 lncRNA upstream 880578 12279793 ~ 12280197 (-) True G69607
XM_043249222.1 mRNA downstream 3 11392240 ~ 11396663 (-) True LOC122351856
XM_043249223.1 mRNA downstream 7288 11386377 ~ 11389378 (-) True tlr20.4
XM_043249309.1 mRNA downstream 164978 11225956 ~ 11231688 (-) True lcmt2
XM_043248821.1 mRNA downstream 180012 11210200 ~ 11216654 (-) True rab5b
XM_043249581.1 mRNA downstream 191698 11193693 ~ 11204968 (-) True armc8
XM_043248236.1 mRNA upstream 1336 11400551 ~ 11404296 (-) True gtpbp8
XM_043249495.1 mRNA upstream 54854 11454069 ~ 11464414 (-) True LOC122352021
XM_043248275.1 mRNA upstream 97732 11496947 ~ 11500495 (-) True LOC122351308
XM_043249140.1 mRNA upstream 583753 11982968 ~ 12000692 (-) True efnb2a
XM_043248593.1 mRNA upstream 604789 12004004 ~ 12009937 (-) True arglu1a
XR_006251823.1 other downstream 710039 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 877209 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 954794 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 97795 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 767776 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1023214 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1309416 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1338829 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile