RNA id: TU102823



Basic Information


Item Value
RNA id TU102823
length 561
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G69518
representative False

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11979781 ~ 12009922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cacacacacacacacacacacacacacacacacatatacatatatatatatatagacgtCTTACatcttcctctgtctctctatctctacTCTCCTTTCATCCTCTTCTCTCTTCTGCTTCTCGTCGGTGTTCCTCTTGCTCAGTGTCCGGCCGAACATGTCGGTTCGGTCGGGGGGTGAGCAACCTCTGTCCCTCTTGCTGCCTGACCTCGAGCGGGACCTTCTGTTCCTCTTCACTTCCTTCGATCTGCTCCTTTTCTTGCTGGATTTGGATCTGGAGCGACTCCGTCTGCGGCTGTGTTTCGAGTGTTTGGACCGGGACGTGCTGCGACTCCGGGAGCGACCCATATTCTGCACGAACAAATCCGACTAACAGCGCTAAAGAGGGTCTTGTGAACGCAGCACGGTCTGCAGCGACCTCGTATAATATTACGAGACGGTTACccgtgtaatttttttttaaatatgagctcGTTTAATGAGAATTTTTGTTGCTTTCTGCTCCAGTGAATCTGCGGAATCAAACAATATGGCCACCACCTCCGGTCTTCCTTTTCCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102766 lncRNA upstream 556464 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA upstream 556464 11420205 ~ 11423317 (+) False G69483
TU102718 lncRNA upstream 734303 11245151 ~ 11245478 (+) True G69459
TU102659 lncRNA upstream 778616 11200651 ~ 11201165 (+) True G69417
TU102625 lncRNA upstream 889347 11063601 ~ 11090434 (+) True G69403
TU102851 lncRNA downstream 190012 12199934 ~ 12200597 (+) True G69539
TU102902 lncRNA downstream 312329 12322251 ~ 12322532 (+) True G69578
TU102962 lncRNA downstream 435586 12445508 ~ 12451348 (+) True epc2
TU102960 lncRNA downstream 437407 12447329 ~ 12452365 (+) False epc2
TU102968 lncRNA downstream 447342 12457264 ~ 12457498 (+) True G69625
XM_043249494.1 mRNA upstream 489632 11465604 ~ 11490149 (+) True LOC122352020
XM_043249225.1 mRNA upstream 593787 11382392 ~ 11385994 (+) True nepro
XM_043249308.1 mRNA upstream 597829 11379870 ~ 11381952 (+) True tex30
XM_043248189.1 mRNA upstream 600359 11372926 ~ 11379422 (+) True poglut2
XM_043248862.1 mRNA upstream 607210 11263726 ~ 11372571 (+) True stxbp5l
XM_043249531.1 mRNA downstream 36552 12046474 ~ 12086508 (+) True arhgap15
XM_043248390.1 mRNA downstream 112309 12122231 ~ 12155973 (+) True LOC122351360
XM_043248569.1 mRNA downstream 382364 12392286 ~ 12429356 (+) True acvr2aa
XM_043248560.1 mRNA downstream 425066 12434988 ~ 12445737 (+) False epc2
XM_043248559.1 mRNA downstream 425068 12434990 ~ 12445737 (+) False epc2
TU102754 other upstream 489785 11483437 ~ 11489996 (+) False LOC122352020
XR_006251850.1 other upstream 1584551 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 2423134 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2830115 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2830120 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU102836 other downstream 36577 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 617613 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 720914 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 722711 12732633 ~ 12741060 (+) False LOC122351618
TU103123 other downstream 762166 12772088 ~ 12773109 (+) False LOC122351618

Expression Profile