RNA id: TU102836


Basic Information

Item Value
RNA id TU102836
length 1524
RNA type TUCP
GC content 0.47
exon number 14
gene id G69527
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12046499 ~ 12155804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCACTTCTTCGAGAGACGTAGAGTTTGTGTCCCATGTGACTTGTACACTTCCTCCAAACGAtactttctctctgtctttgctGAAACAGGTTTTGAgcagttttttaacattttggaaTACGACAGAGAACCAGtatcaCAGCGATGCAGAAGCAGCCAGCAATGGTGCTTCCTGGAGCCGTTCAGATGAGAATAAAGAACTCTCAAAGCAGCTCCGGAGAGAGACTCAGCCAGACAAAGTCTATGGTCCTACCAGAACCTGACACACTACAGAAACCTATGAACCGTCACCGGAGGAACCAGTCTCAGCATAACGTTGAAGGCTCTGTCGGGCTGCAGACTATTTTAAAAGGAGAATATCTGAACAAAGCCAAAATTTCTGAAGGAGGAAAGAAATTACGGAAAAACTGGACTTCAACCTGGGTTGTTCTTTTGCTCCAATCAGCTGTTGTTCTATAAAGAGAGCAAACAAGAAGCCACATAAAATTTGAAACCAGGTGGTAAACCAGATGGTGTGGATCTGTGTGGGGCTATAATCGAGTGGACAACAGAGAAATCCAGTCGAAAAAACGTGATTCAGATAACCACCTCAAATGGTCATGAGTTTTTGCTGCAGGCGGATCACTTTCCAACCATCTCTAAATGGCACGATGCCATCAAGAAAGCAGCGGACAGTCTGTCGAGTGGAGCTGGAGGCCAGAGCTGTGGTAGAGCAGCCCTTCACAGGTCCAACAGCATAGAATGCTTGTCCAGACCAACCTGTGAACCCACCAAACCTAAATCGAAAGAGACCAAATCTGAACACAGACGCTCCATCATGTTCAAGCTGAATTACAGCGCCTCAGACAGCGCCGACAAGAATGGAGTTAAGAACAGACTGAAGAAGTTCATCTCCAGACGGCCCTCCATGAAAACGCTACAGGAGAAAGGCCTTATTAAAGACAGAGTGTTTGGATCTCACATGCTGACCCTGTGTCAGAGAGAAACGACCACAGTGCCCAAATTTGTGAAGTTGTGTGTTGAGGAAGTAGAAAAGCGAGGCCTGGAGGCTGATGGGATATACAGGGTGAGCGGCAATCTGGCCATCATCCAGAAACTACGCTTCCTAGTTGACCAAGAGGAGGAGCTTGACTTGGGCGACAGCCAATGGGAGGACATCCATGTCATCACCGGAGcgctaaagatgtttttccGTGAACTGCCAGAGCCCCTGTTTCCCTTTCGTTTTTTCGACTTGTTTGTGGAAGCCATCAAAATTAAGGAGCCCACACAGAAGGTTcaagccttaaagaaactgATCCATCAACTCCCCAAACCCAACCACAACACCATGAAACTGCTCTTCCATCACCTGAGGAGagTCTTGAtgaaatcaaagaaaaacttGATGTCGACTCAGGGCATCAGCATTGTGTTTGGACCGACTCTCATGTGGCCCGAGTTTGAATCCGGGAACATGGAAGTCAATATGGTGTATCAGAATCAAATAGTGGAGTCCATTCTCATCGAATGTGTGGAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102823 lncRNA upstream 36577 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA upstream 36577 12005701 ~ 12009922 (+) False G69518
TU102824 lncRNA upstream 36577 12005701 ~ 12009922 (+) True G69518
TU102766 lncRNA upstream 623182 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA upstream 623182 11420205 ~ 11423317 (+) False G69483
TU102851 lncRNA downstream 44130 12199934 ~ 12200597 (+) True G69539
TU102902 lncRNA downstream 166447 12322251 ~ 12322532 (+) True G69578
TU102962 lncRNA downstream 289704 12445508 ~ 12451348 (+) True epc2
TU102960 lncRNA downstream 291525 12447329 ~ 12452365 (+) False epc2
TU102968 lncRNA downstream 301460 12457264 ~ 12457498 (+) True G69625
XM_043249494.1 mRNA upstream 556350 11465604 ~ 11490149 (+) True LOC122352020
XM_043249225.1 mRNA upstream 660505 11382392 ~ 11385994 (+) True nepro
XM_043249308.1 mRNA upstream 664547 11379870 ~ 11381952 (+) True tex30
XM_043248189.1 mRNA upstream 667077 11372926 ~ 11379422 (+) True poglut2
XM_043248862.1 mRNA upstream 673928 11263726 ~ 11372571 (+) True stxbp5l
XM_043248569.1 mRNA downstream 236482 12392286 ~ 12429356 (+) True acvr2aa
XM_043248560.1 mRNA downstream 279184 12434988 ~ 12445737 (+) False epc2
XM_043248559.1 mRNA downstream 279186 12434990 ~ 12445737 (+) False epc2
XM_043248152.1 mRNA downstream 297322 12453126 ~ 12456128 (+) True med4
XM_043248153.1 mRNA downstream 297322 12453126 ~ 12456128 (+) False med4
TU102754 other upstream 556503 11483437 ~ 11489996 (+) False LOC122352020
XR_006251850.1 other upstream 1651269 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 2489852 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2896833 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2896838 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU103038 other downstream 471731 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 575032 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 576829 12732633 ~ 12741060 (+) False LOC122351618
TU103123 other downstream 616284 12772088 ~ 12773109 (+) False LOC122351618
TU103124 other downstream 616620 12772424 ~ 12773109 (+) False LOC122351618

Expression Profile