RNA id: TU102995


Basic Information

Item Value
RNA id TU102995
length 1018
RNA type TUCP
GC content 0.37
exon number 1
gene id G69650
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12422429 ~ 12423446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGGTTAGACTTCAGCAGCACATTCTTGCTCTTAATATCTCTGTGCAAATATAACACAATTTTAAGTACAAAGATACTTCAAATATggtttcagctgtttttgtctATGCaaatgaaagtcagtggagTCCAAAACTGACTTTCATTGACTTTcactgcatggaaaaaaaagaagaattcaAGAATTCAACccatcaaaaatgttttcctgCACAACAAAGCAAGTCATagagtgttttctgtttaatacaGCCAATGATCGTAATCCAAAGAGTTTTCTAACCTGTGTGCGATGGCTGGTTTGTGGCCGTCTCTGTGTCCGGGGAAGTCAGAGTGTAGGTAAGCCAGGCCACGAGCCATGGTTTGAGCGATGTGACACAGCTCATTCCACGTCACTACGTTTGCCTTTAGGTAGTCCGTCAGGGAGCCCTGCACACAGATATATCAGCCTgcagtgcaaaaaaactaaaaccctTTCAATTCACAATAAAAGTATAAACTCAGCAATAATACTGACTGTGCACAGTCTAAGCGCACTCTTTAACAATTAACatgacaaatacaaaaaatacatttttcttttgtaacgTTCCTTAAGGACATATAAAGataaaaacctgaaaatataGTACTACATAAGTAGCATTCAAAAAGCAACcaattctcaaaaaaaataaattataatcattgtaatttaaacattatcgtaattcataatttcataaaaaaaaaaaatactttttaaagtttattagCAACATTAAATAGCATGTAATCCCTGCTTATTATTATAGCAGAGATTAATTAGTAAACTTTGAGAAACTAAAATGGATCTAGAAGCTGCCAATACTGTCCAGCCTTCATACATCTCCACACCTTCTCATGGTAAGCCGTGATGAGCCACAGCTCAATGTCCAGGTTGCTTCCTCTTTTCTCTGCCCCGATGAACTGCAGAACATTTTCATGTCTCATGCCGGGGAGATTGTAAATGTCATACTCATTCTGCCATGACAGCT

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102990 lncRNA downstream 10594 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 15667 12406167 ~ 12406762 (-) True G69644
TU102988 lncRNA downstream 17708 12404395 ~ 12404721 (-) True G69643
TU102987 lncRNA downstream 25915 12396066 ~ 12396514 (-) True G69642
TU102986 lncRNA downstream 27429 12394771 ~ 12395000 (-) True G69641
TU102976 lncRNA upstream 2069 12425515 ~ 12429347 (-) True G69631
TU103059 lncRNA upstream 94840 12518286 ~ 12582425 (-) False lrch1
TU103090 lncRNA upstream 222390 12645836 ~ 12647002 (-) True G69704
TU103148 lncRNA upstream 307595 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 349995 12773441 ~ 12773852 (-) True G69738
XM_043248071.1 mRNA downstream 177641 12196754 ~ 12244788 (-) False zeb2a
XM_043248073.1 mRNA downstream 177798 12196754 ~ 12244631 (-) False zeb2a
XM_043248072.1 mRNA downstream 178805 12196754 ~ 12243624 (-) True zeb2a
XM_043248076.1 mRNA downstream 179096 12196754 ~ 12243333 (-) False zeb2a
XM_043248074.1 mRNA downstream 179096 12196754 ~ 12243333 (-) False zeb2a
XM_043248561.1 mRNA upstream 22106 12445552 ~ 12452338 (-) True itm2bb
XM_043249278.1 mRNA upstream 94838 12518284 ~ 12554050 (-) True lrch1
XM_043249281.1 mRNA upstream 94838 12518284 ~ 12553992 (-) False lrch1
XM_043249280.1 mRNA upstream 94838 12518284 ~ 12553989 (-) False lrch1
XM_043249279.1 mRNA upstream 94838 12518284 ~ 12553980 (-) False lrch1
XR_006251743.1 other downstream 232773 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 923057 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1735802 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1902972 10515272 ~ 10519457 (-) False fdx1
XR_006251818.1 other downstream 1980557 10433507 ~ 10441872 (-) False trim13
TU103144 other upstream 285185 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 314598 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 561678 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 1049694 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 1049694 13473140 ~ 13495645 (-) False gypc

Expression Profile