RNA id: XM_043249278.1


Basic Information

Item Value
RNA id XM_043249278.1
length 7145
RNA type mRNA
GC content 0.42
exon number 21
gene id lrch1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12518284 ~ 12582425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGagcctttttaatgttttctaacGCATTATCAGTAAAGCGGTGTTCTGCTCGCCGTCACCAGCAGGTGGCGCTAAAGTAAAGGCCATAGAGACAGTTACTGGCACGAGCTCAGGTCCATAAACAAACTGCGCAGAAGCTCCACGGACAGTCAGATAGCGCACTAGGAGGAAATTCACCCACCGTTGTCGAGACCAGCGCATTATCTTTGGGGATATACCGATCGCAGAGCCTTTCGACGagccttttttttcctgacGGGGGGCGAACATGGCGACGCTGGGACCGGAGCCCCGTACTCATTCCCAGCTGCCTTCTGCCGCATTACAGACAAACCTGAGCGGACTGGGCTCCAACACGAACCTGCCCCTCAACCGGGGCTTGGAGAGAGCTCTGGAGGATGCGGCGAACTCCGGATTTCTGAACCTCAGCACAAGAAAACTGAAAGAATTCCCCCGGACGGCGTCTAATTACGACCTAACGGACACGGTTGAAGCAGATCTTTCGAAGAATCGCTTGATTGACATCCCATCAGAGGTGTGTCATCTGGTCTCGCTGGAAACGCTGAACCTTTATCACAACTGCATTAAAGGCATTCCTGATACCATCATCAGCCTTCAGTCCCTGACCTGCTTAAACATCAGCCGGAACCAGCTGTCAGCGCTgccagcatgtgtgtgtggtctTCCTCTGCGAGTGCTCAACGCCAGCAATAACAAACTCAACGCACTTCCAGAAAGCATAGGCCAGCTCACCAATCTCATGGAGCTGGATGTAAGCTGTAATGAAATCACAGCTCTTCCACGCCACACCGGCCAACTCAAAGCTCTGAGGGAGCTCAACGTGCACCGAAACCTTCTCTGCGTCCTTCCAGAGGatttGGCAGATTTACCCCTGGTCAAGTTTGATTTCTCCTGTAATAAGGTTTCTACTATTCCTGTCTGTTATCGAAAAATGACCCAACTCCAATCACTACAGCTGGAGAACAATCCACTTCAGAGTCCTCCtgcacagATATGCATGAAGGGCAagattcatatatttaaatacctCGCCATGGAGGCATGTCGTAGTGACAAGATGGCCGATGCCCTGTACCTTCCTGTCACAGACCGCCTTAGCTTGACACGACCCACGAATGGGAGCACTGAGGACATTGATCAGCACAAAAAACTTGACAGTGATTCTGGGGTGGGCAGTGACAACGGAGACAAACGCCTTTCTGCCACAGAGCCATCAGATGAAGACAGTCTCAGCTTGAATGTGCCCATGACCAACATCACAGAGGAGGAGGGCTTGAGCAAAGACGACTCCAGCGAACACATCAGCGCTCTGACAGGAGACAGAAGTTCATCTGAATCTCTCAAGGAGCACCTGAGCTATCGAGAGACTACCCTCAGCTCACCGTTCATCAACTATATCAAAGGTCGAGGTGCGGATTTCGATGAGCCCCTCAGGATAGAGGAAGACAACCACTGGAGTTCAGAACAAACGTCAAAGGTTAACATGATCAACCAGTTAAAGGAAGCCGTGGAAATGCTACAGGATCCTAACAGGGTTAACATGAACTCGACTGATCTCTCTGGTATCAAGCTCTACCCCGTGGAAATGGTTACAGTAGATGAGTCACTCAATGGCCAAGAAAGTGACGAAGGTCAGGCGACACCTAAGGCTGCTCCTGGAGAATGCTGGGAGTTCCAGAGGAAGAGACAGTGCATTCTAGAAAGGGCCCGGCTCGAGGCCCAGCTCGCATGTCAACAGTATGCCCTGCACGTGGCACAACAGGGTGACGTGATTGGCCAGGAAGGATCAGGTGATAGTTGTGAGAACCAGGTTACCGAGAGTGAAGACAAAACCCCAGTTTCCAGCCCTACACTGAGCTCCCCTCCCTTTGGTCTGAAGCCCAGATCAGCTTCACCCTCTGTGCCGTGCTCGACTCCGCCCTGTCCCCTCCCCCTTACACAGGCCCCGCCCACTGATAGAGACACGCCCCCTAGCCCAGCTGAAGGAGACATGCCAAGCAGTGTGTTTTTCAGGACTCACAAGACTCTGGAATCAGTGGATCCTCAGTTCACCATGAGAAGAAAGATGGAGCAGCTCAGAGAGGAGCTGGAGCTCATAGAGCAACTACGAGAGAGTATTGAGAGCAGACTGAAAGTAGTTCTTCCTGAAGATCTGGGCTCTTCTCTCATGGATGGGGTGGTGCTCTGTCATCTAGTCAATCACATTCGGCCACGTTCAGTGGCCAGTATCCACGTGCCATCCCCTGCAGTGCCCAAGCTTAGCATGGCTAAATGTCGCAGAAACGTCGAAAACTTTTTGGACGCCTGCAGGAAAATGGGAGTCCCTGAGTCCTCTCTCTGCTCGGCTTATGACGTTCTGCAGTTTAACCTGCGTCCGCTCTGGGCCGTGGTCGCGGCCTTGCTCATGGCGGAGAGCACAGGAACAAGGCAGAAGGAAGGAAAGGTGGAAAGTGGCagggagaaagagacagaggtcaaGAAGCTTATCCCCGAGTCCACTCAGACTCCACCCCCTTCCTGGCAAATATGGGATCTGATTGGCTCAAGTCTACTGCACGTTTTCTGTCTGGTGATGCTGTTTGTGGCCTACAGCTGGAGCgaatttaaataacatacatGAACTAATAACTCAAAAGTAACACATTATATCATTTACTGGTCTTTGAAAGCACATTGAACGGTTGGCCTCACTTAAAGGTatagtacacccaaaaatgaaaattctgtcatcacgTACTCACCCTCAAGTGGTTTGTTACAAAACCGTACGGGTTTATTTctttggaacataaaagaaaatagtttaaaGAATGCGGGTAACCAAGCAATTGTGGTCTCCGCTGATTTCCATattgtggaagtcaatggagaCCAACTCAAActgcagaattttcatttttgggtgaatgaGCACAGCCCAGAGAGTTTCATGTCTGATCAAACCTTACATCTTACCTTGGCCGTGATGGAAACCATACGTAAAACCaaacatgcaacatttttgtaaaaaaataacgcGCTCCAGGAagagatttaaatattttcatgctcGAGTAAGTGTTATTTATTAGTCGGGGATTCGAATACCATATTTATCAGTCCTTGCAAAATGCTAAGGAAAcctttttacaaacatttacgCAGGAGGTGCACGGAGCACTTTAATGAGGAATGACGAATGGCCACATTCTCACTCACTTCCACTTCTGTACAAAAGTTGTTTCACAAAGTTCCGTTTCAGCAGTCGTAATGCTGAACTTTGTCGGATATTGcacatataaacaatatatactTATTAGCATctgcatgacaaaaaaaaaacggatgTGCCAGTCATGCCAGTGATCAGCAATATATCTACAGGAATCAAGCGCACATTTGGTCTGCTTCACACAAAATAATTTGCAGATAATAAATCAGGAAGCTCGAGTAAGTGAAGGCCCAGATGCCATTAAAGCAAAATGATAAGCTTCGCTTGCACAGAAGTCTTGTACGGTGAGGTTATATCtatgattaaaacatttaatcattagCATAAGGGCTAATTTGTCTGTTGGATGTAAAAAGCAGTTAGTTTGGTTATGAGTGTTTTTAAGAGCATGATGTGTTATTGTTTAGATCGGGAATTATTAAACATCCTGCACAGTCGTTGCAAATGATTAGATTGCTATTTTTTCCAAAACGCCATCTATGGGATGAAACGGGACTAATGAATCATTGGTTTCATTTCCCGATCATTAGTAAAACAGAATGACAGAGCGAAccaaatctattttttaataaatttaataagcAACATTCCACAGCAATGTGACTAATCCAAGGAACAACAGCATCGGATAATACGCTTTAATTCGTGTATTCTATCAGTGATCTGTAATAGAGGTTGAGgtggctttttttaaaatgatgaaatatcatattaatgcagttttaataaTTGAGTAATCAGTGTAGTGGCTGTATGTAATTTACTTCGTTGAAGGTCTGTATGCAAGGTGTCTCTAGAACGGAGGGTCTTCTAATCGGATGCTCTGATTCTATTTTAGGTTCCGATCATTATCTCACGTAATAGAATGACCTTCTTTATCTCATCAGAGATAAAAGAAATCTTTAAAGAGAGCCGTTAGTAAATGAGCATGTCACTGAGGCCTCTTGACATCACTTCCTCAAACTACAGAATACTTTGAACCTTATCGGCGGGATCACAGCAGTTATAATTGGCACTGCTTTCATCATCCAGTTTGACAAAAATAAAGGCAATATTGACTGTTCGGGACTTTTTGTTCGGCATATTTCctcctttgtaaaaaaaaaaaaaaaaaaaaaaagctgcaagaTGCAAAAAGTGTTTGTATTGCTTAAATTAGATTGCGTGGGTTCCTCTGACGGTTCAGCCGCTTCTTGAATAGCGTTCAGTGCTGCTGCTTCTAGTGGACTTTGTAAGGCTTTGTGGTTTTTATGAAcctgtaaatgaaaaagaataaatgtacaGTTTGGGTTGTTTTTCTCATCTTTGCCTTTTTAAACCAccgtttaaatgtttggggtcagcatttttttttttttattgtttgcatgACTGATATCGTATTTGCCATCACTGCTAAACAAGGTGAGTCTCTATTAGTTTCACTAACTGGATTCAAGAGCGTTACATTTGAATGGACTGTGCataataaattctgttttccaTGACTGTGTGTCTTTCTTCTCTGACACGACACTTTGTTTGTCTTCTCTGtgaatctctctctctaggATAAGTTATGTCTGCCACATCACATTCTTGAGGAGAAGGGCCTGATCAAAGTTGGCATCACTGTCCAAGCTTTGCTGGATGAGACTTCGGCCAGTGAGACACTCATCACATGagtcgcgcacacacacacacacacacacacacacacacacacacacacacgctaataCCGGAAGACAATCTTTAAGAATTTCCCTGGACTGTGTCCATTTATTGCTATTAGAACAGTTGATCCTCAGCTTGCAGGTATATGCTCATGTTTCCctcactttcttttctttcttatttagTACTGTTATCTGATCACTGTCGCCCAGGCCACAGGTCGTATAAGCAAAATTAGCTCAAAAGCAGCTTAAGAtaagaaattgttttatttaaaatgcatttatttattaaacggTTAGTTGAGAGGTATACAGAATTGTGCACAATTTCTGATGGTTTTTATATACGCATTTACCCATATGATATTTGTTTTGGGCAAACCTTTAGCGATCTAGATTTAAAACACTCATCCTCCCAGAGTCTGGTTTTGTAACCacttttgagttggtttttgggAGACGGTGATGTTTTGTCTCAGGGGAGGTGTGGCCTCACTATAGTTTCTTACGGTCTCTGCTCTGCTTACCTGTCGGTCAGGAATGatttcactaaaaaaaaaaatatgtttgagtGTGTGGACGGTAGAAAACAACTTACCTGGcatttgttttcagttgtttatgCGTGAGTTATACCTTGAGGAGTATTTCTTTGCGAGCGTGAGAGGACGAGAGCACATgttggcactttttttttttttatatgcaagtttgtgtgttttttttttttttagtgcgtATTTGTCTAGTGTCCAAAGCTTCAGCTCCTCGCAGATTCAGCCATGAAACAGACCAAAACACCTGAAGCTGATATCTCACTGGAGATTATTTGACAGTTGccaaaattattttcatatatcaAAACTGATTTAcaaacataatcattttatagttttttaaaatgtatttttaaaataaaggttttgtagTATTTGTAGAAGGATTTGTTACGTGATGTTGGTGTGTGAACGTGTAAAATGTAcagaacatttatatttgatgtgtttattttaatatgtttgaaTCGgtgtttattttacttaaaactaaagcacaatttattttattaatgtgaactgacaggggaaaaaaactctTTTAGGTTCTTATATGAAAGCAGTTATAACACTTCCATGTGGGATTTCTGAGAGACTGTGGGCTGTAACTATTTATTCATGACAGTAATTCATGCATTCAATACAAATACAATGCATTTACTAAGGATTATCTCTGTACTGTAATAGTCAACAAAAACGTATATTATCTGCTCTTTAAACTTAATGCGCATTATTATACTATAGGAcaatattttggccagaagcttTGAATTGGTGCATCATGGGTTAAAATGCTTTCCTAATAATACTCACACAGCTTCCTAGATTTTAAACCTTTAGTGATTTGAATGAAAcaaatggaaagaaaatgaagatGCGGATTAGAAATTTTAGAGACATTTGAACGGGATAGCACTTAAGATTTTGGTTTTTGGTAGTAGCTTCacatggtatttttattttacaaatctttgcttttgcattaaaaaaaaaatattcatgcataGTTTAGACCACAATCACATCCTATAAATTCACCGCTTTACCTTTCAAGAAATGTCGTCCTCAAAGAATAGAAAATACCGATTTGAGGTTTATGGTTCATATTCAAGTACAGTATGAAAATCTCCACTACAGTGAACAGGTTGTGCATCGTTACTGTACCCTCAACATTCCCCACCACTTCACAGAAACAGCAGCGAAACTAAGTCTGCTTCATACACACTAGATAGAGGTTTAAATGcagatttgattttgaaatgaCAGTGTTTTGCACTTTATGTATTTGGGACTGTCTTTTTGGCAACTGGCAAATAGTATTAAGCGTGgtatttatattacagtatttggAGAAAATATCAGATGGTCGGATTACTGATGTGTTTgagaaatcactttaaaatggGATACAAATCTTTAACTGCTGAATGTTATGTGGCTATTTTGTCTACTTTGTATAAGGAGAAACGGCTTGTACTAAACAGTTTTGtactttaattttataaataggaATTATTTTTCCATGTCTTTTCAGTGTTTGGGATTCTTCCCCTTTGTAATTCTGTGAACTTTAAATGCATGTACAGTAATGTTTTTTGGGAAATGCATGCATGTCATTCCACCTTTTGCCTTAACCTCTCTGTAAATAAGGTTTATTTGTACCAACTTCTACCAGTAAATACTTTCCCCTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102976 lncRNA downstream 88937 12425515 ~ 12429347 (-) True G69631
TU102990 lncRNA downstream 106449 12411507 ~ 12411835 (-) True G69645
TU102989 lncRNA downstream 111522 12406167 ~ 12406762 (-) True G69644
TU102988 lncRNA downstream 113563 12404395 ~ 12404721 (-) True G69643
TU102987 lncRNA downstream 121770 12396066 ~ 12396514 (-) True G69642
TU103090 lncRNA upstream 91786 12645836 ~ 12647002 (-) True G69704
TU103148 lncRNA upstream 176991 12731041 ~ 12731743 (-) True G69733
TU103153 lncRNA upstream 219391 12773441 ~ 12773852 (-) True G69738
XR_006251806.1 lncRNA upstream 233065 12787115 ~ 12789134 (-) True LOC122351847
TU103184 lncRNA upstream 481906 13035956 ~ 13037453 (-) True G69762
XM_043248561.1 mRNA downstream 65946 12445552 ~ 12452338 (-) True itm2bb
XM_043248071.1 mRNA downstream 273496 12196754 ~ 12244788 (-) False zeb2a
XM_043248073.1 mRNA downstream 273653 12196754 ~ 12244631 (-) False zeb2a
XM_043248072.1 mRNA downstream 274660 12196754 ~ 12243624 (-) True zeb2a
XM_043248076.1 mRNA downstream 274951 12196754 ~ 12243333 (-) False zeb2a
XM_043248929.1 mRNA upstream 65226 12619276 ~ 12640868 (-) False slc39a10
XM_043248931.1 mRNA upstream 65226 12619276 ~ 12640858 (-) False slc39a10
XM_043248932.1 mRNA upstream 65226 12619276 ~ 12635059 (-) False slc39a10
XM_043248930.1 mRNA upstream 65226 12619276 ~ 12631121 (-) True slc39a10
XM_043248079.1 mRNA upstream 153926 12707976 ~ 12720690 (-) True LOC122351186
TU102995 other downstream 94838 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 328628 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 1018912 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1831657 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1998827 10515272 ~ 10519457 (-) False fdx1
TU103144 other upstream 154581 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 183994 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 431074 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 919090 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 919090 13473140 ~ 13495645 (-) False gypc

Expression Profile